Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00149 ATGGATGAACATATTATTATGTCATCATCTCCTAATAGATTGGTGGAATGTAGAATATGCCACAGTGAGGATGAAGATTCAAACATGGACACACCCTGTTCTTGCTGTGGCACATTGAAGTATGCACACCAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGAGATACTACATGTGAAATTTGCCAACAGCAACTCAAACCTGGCTATACTGTGCCTCCACTGTTACACTATGCTTCTCCAATAAATTTTAGAGGGAACTGGGAGATTTCAAGAAGGGAGCTTCATAACCATGAGTTCACAGCAATGTTTAGTGCTAATCATGAATTCCTAGACCTAGACTTTGAATATTCATCAGCCCCCTCTACAAGAAGTCTGATATTTTGCCGCATTGTTACCATTATTTTTATTGGACTTCTTGTTTTACGCCATACACTTCCAATCATATTTATACTCAGAGGAGCAAGAGCATATTCATTCACAGTGTTTATGTCAGTAGTTTTGAGAAACATTGGGATGATTGTACCATTTTATATAATGGTTAAAGCTGTTATTTCAATCCAACAGTTTCAATACCAGGGTCATCAGCAAGCACACCAGGAAAATGAAATAGGACAACCTCAATTGCGTCTCATTCATATAAGTGAATCAGTGGTAAACTCCAGAGTGGAGTAA 675 0.3793 MDEHIIMSSSPNRLVECRICHSEDEDSNMDTPCSCCGTLKYAHQKCVQRWCNEKGDTTCEICQQQLKPGYTVPPLLHYASPINFRGNWEISRRELHNHEFTAMFSANHEFLDLDFEYSSAPSTRSLIFCRIVTIIFIGLLVLRHTLPIIFILRGARAYSFTVFMSVVLRNIGMIVPFYIMVKAVISIQQFQYQGHQQAHQENEIGQPQLRLIHISESVVNSRVE* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00149 224 Pfam Protein of unknown function (DUF3675) 68 184 IPR022143 -
Phac8g00149 224 CDD RING_CH-C4HC3_MARCH 17 63 - -
Phac8g00149 224 FunFam Zinc finger family protein 6 72 - -
Phac8g00149 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 71 IPR013083 -
Phac8g00149 224 SMART ringv_2 16 63 IPR011016 GO:0008270
Phac8g00149 224 ProSiteProfiles Zinc finger RING-CH-type profile. 9 69 IPR011016 GO:0008270
Phac8g00149 224 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 8 192 IPR033275 -
Phac8g00149 224 Pfam RING-variant domain 17 62 IPR011016 GO:0008270
Phac8g00149 224 SUPERFAMILY RING/U-box 15 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00149 Phac-Chr8 975502 977646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00149 16 102 C3H Transcription Factor Family AT2G37950 34.444 1.03e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00149 - - var:108321682 368.237