Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00141 ATGGATTCTCAAACCCTAGACTCCACCAAGCTATTCCTCACAGCCCTAAAAATCCTCCAACCCCAGCCCCCGCCGCCACCCTCCGCCGCCCTCCCCCCACTCCCCTCCTCCGTCCCTCACTCCAAACTCATCCCTCACACCCGCTTCCTCGTCGATGCCTTCCGCCACGCCGGCCCCCACTCCCACTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCGCGCGGCGTCATCTACTGCTCCGCCACCACCGCTTCTCTCCTCAGCCACATCCTCCACGTCCCCGCCGCCCTCGTTGTCCCCCTCCCCCTCCGCCAACCGCTCCTCATTGACGGCGTACAAGTCTCCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTCCAGTTCCTCTTCGCCCTCCCCTGCGCCGATGGCACCGCCGCCCTAAGGTACGTCCACACCGGCGACTTCCGCTTTTCACCTTCCATGGTTTCCGAGCCCGCCCTCGCCTCCTTCGTCGGTGCCGATGCGGTGTTTCTCGACACCACGTATTGTAACCCTAAGTTCGTTTTCCCCTCGCAAGATGAATCCTTTGATTACGTTGCCAGTGTTGTAGAGAGGATTGAGCGTGAGTGTGGTGATAGTGATGATAAAGTTCTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAAAAGATTTTGCTTGAGCTTGCACGTAGGTTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGTGAGAGCGGTGAGTTTACTGAGAATGGGTTAGAGAGTAATATTCATGTAGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTCAAGATGAAGGAGGTTATGGCTGAGAGAGGGGGTTCATACTCCAGGGTTGTGGGCTTTGTACCAACCGGGTGGACCTATGAGGTGAAGCGAGGAAGGTTTGCAGTGAAGTCCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGATGAGCTGAGGGAGTATGTTAAGTTTTTGAAGCCAAAGCGAGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGCAAACATGCTGACAGAATTAGGAAGCATTTTGCCGGGTTGGTCGATGAGACTGCTAACAAGCACGAGTTTTTAAGGGGTTTTTGCCGTGCACCTGGTGAAGAGGGTTTCAAGGCTGAGAAGGGTGTTAGTAGTGATGCTCTGGAACCAAGTCAAGGCATGGACAAAGAAGAAGTCATTCCATTGGAGGAGATAGAAGGTGATAAAAGTGTTGATCCAGATGTGGCTGTGGGTTTGTCTTCTTTTATGGGAGATACTTGTACACAAGATCCTACTTTGCTGAATGATGAAGAAAAAGAGAAAATAATTCGAGAACTTAGTTGTTGTTTGCCCACGTGGGTCACCCGAGTCCAGATGCTGGATATGATCAGCATCTCAGGGAGCAACGTTGTTGAACTTGTTTCTAATTTCTATGAACGTGAAACTGAGTTTCATGAGCAAATGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACAATAAATGACACTGATTCACTTGTAAAACCTAGCCTTAATAATACAAACAACACGTGCGAAAATATTGACATTTTTCCTAGTCAAGACTCCAAATCAACTATCCTGAGGCGTAAAGTACCCAGTCCCATATCTCCTGCCAAAAGTCCTGCCAAAAGGAAGAGAGGCAGTGACAGTAAGCTAAACAAAAAAGGCAAAGTCAAAGCAAAATCTGAACCAAGTGGTTCAAAGCAGTCCACACTTACAAGATTCTTCAGTAAAGTAACACCTGAGATGCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGACCAAAGCTCTGAAGTTGCGGACTTGTTGCCGACTGATGTTGGACAAATATACAAGGATGAAATTGATCAATTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAATCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTGGATATATATTACTGTAATTCTGGAAATCTTAGCGAAAATGAAAATGAATTATCAGTTATAGAGGAGAGCACAATTGATAGACCTTTAGTAACGAAGCATGCGTCAGAGAGATTGAGAGTTATGCCTGATATGTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCCACTCAACTATCTCTACCACCAGAGAAATACAACCCTAAAGAACATGCATGTTGGACAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCATTGTTGTGCAATATGTTCAGAAGTCTGTTGGCCTTATCTCCAGCAGATGTGCTTCCTGCAGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGTTTGAAAATAAGGGAGATGTACAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTGCTTGCACCACCTACGCCACTTCTAATTAAGGATGTTTTCTCTGCGCTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGTACATCTCGGAAGAAAGGCATTATTGTTCATCTCATGCACTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGTACCTTGGTCAGGAACCTAAGGATTGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTAGCCCCACTTTTCACCAAGAAGGAACTGCAGAAAATTTGAAGGAGAAACTTCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCTAATCTGGATCTCATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCCGTTTCAAGTTTGTCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAACGGGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTTTTCAAGAAATGGGGACGAAACAACTTCGAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCATAATGGATGCGGAAGTTGTTGGTATTGACAGGAAAAATGGATGTAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGCAAAGATGCATCAGTGACTGCAGAGAGCATTAAGGTGGCTATATGCATCTTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTACGCCTTAGACGAAAGTATCTGAAGGATTTATTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTAGCCTGTGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTCCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGCTATTTTCCATCAAAGCGTTCTGACAAATGGTTAAAAGTCAAGCGAGATTATGTGGATGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTGTGGCGTGTTTCAATCCTGAAACAGAGGAGTACCAAAGCGTATGTCGAGTGATGTCTGGATTCTCAGATTCATTTTATATAGAGAAACATCAAGGTCGTATCTATGTTCCTTTTGCTTACATTGTTGAAGTTCATGATAGTTTATTGTTAACCGTCTTATGTCGACTTCTGCAAATGAAAGAATTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGCACCAGACATTTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGAGGCATTTCAATCAGATTTCCGAGATTTATTTGCTGTGTGTCAGACAGAAACCCAGAAGATTGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACGGTTAAATAG 4311 0.4403 MDSQTLDSTKLFLTALKILQPQPPPPPSAALPPLPSSVPHSKLIPHTRFLVDAFRHAGPHSHSYFLSHFHSDHYTGLSASWSRGVIYCSATTASLLSHILHVPAALVVPLPLRQPLLIDGVQVSLLDANHCPGAVQFLFALPCADGTAALRYVHTGDFRFSPSMVSEPALASFVGADAVFLDTTYCNPKFVFPSQDESFDYVASVVERIERECGDSDDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRGRFAVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHADRIRKHFAGLVDETANKHEFLRGFCRAPGEEGFKAEKGVSSDALEPSQGMDKEEVIPLEEIEGDKSVDPDVAVGLSSFMGDTCTQDPTLLNDEEKEKIIRELSCCLPTWVTRVQMLDMISISGSNVVELVSNFYERETEFHEQMISCQTPVSTSKCCTINDTDSLVKPSLNNTNNTCENIDIFPSQDSKSTILRRKVPSPISPAKSPAKRKRGSDSKLNKKGKVKAKSEPSGSKQSTLTRFFSKVTPEMPGGTQSDNSEPKLDQSSEVADLLPTDVGQIYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLSENENELSVIEESTIDRPLVTKHASERLRVMPDMSGQKVLKDNVDATQLSLPPEKYNPKEHACWTDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGSGSTSRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQEGTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIKESSKPVASTFIMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDASVTAESIKVAICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACLACEATLTKINAFLEDALRSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVDGLNDTLDLVPIGAWHGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEKHQGRIYVPFAYIVEVHDSLLLTVLCRLLQMKEFFSGDKVLSKKPPYYQTGEAPDIWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEDCSTASDIVEMFHSQTRKMDVTVK* 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00141 1436 NCBIfam ATP-dependent DNA ligase 836 1424 IPR000977 GO:0003910|GO:0005524|GO:0071897
Phac8g00141 1436 Pfam DNA ligase N terminus 778 954 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phac8g00141 1436 FunFam DNA ligase 191 347 - -
Phac8g00141 1436 Gene3D - 1249 1435 IPR012340 -
Phac8g00141 1436 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 278 1429 - -
Phac8g00141 1436 MobiDBLite consensus disorder prediction 569 621 - -
Phac8g00141 1436 MobiDBLite consensus disorder prediction 589 609 - -
Phac8g00141 1436 Pfam ATP dependent DNA ligase domain 1024 1244 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phac8g00141 1436 Gene3D DNA ligase/mRNA capping enzyme 1053 1184 - -
Phac8g00141 1436 Gene3D - 755 1026 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phac8g00141 1436 SUPERFAMILY Nucleic acid-binding proteins 1253 1427 IPR012340 -
Phac8g00141 1436 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 980 1246 - -
Phac8g00141 1436 CDD OBF_DNA_ligase_I 1253 1426 - -
Phac8g00141 1436 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Phac8g00141 1436 CDD Adenylation_DNA_ligase_I_Euk 1015 1247 - -
Phac8g00141 1436 SUPERFAMILY Metallo-hydrolase/oxidoreductase 47 370 IPR036866 -
Phac8g00141 1436 Gene3D - 191 347 - -
Phac8g00141 1436 Pfam ATP dependent DNA ligase C terminal region 1341 1405 IPR012309 GO:0003910|GO:0006281|GO:0006310
Phac8g00141 1436 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 758 1007 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phac8g00141 1436 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1048 1056 IPR016059 GO:0003909
Phac8g00141 1436 FunFam DNA ligase 755 1026 - -
Phac8g00141 1436 ProSiteProfiles ATP-dependent DNA ligase family profile. 1135 1282 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phac8g00141 1436 Gene3D - 1035 1248 - -
Phac8g00141 1436 MobiDBLite consensus disorder prediction 626 645 - -
Phac8g00141 1436 CDD SNM1A-1C-like_MBL-fold 38 188 - -
Phac8g00141 1436 FunFam DNA ligase 1053 1184 - -
Phac8g00141 1436 Gene3D - 44 369 IPR036866 -
Phac8g00141 1436 FunFam DNA ligase 6 44 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00141 Phac-Chr8 929124 942572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00141 756 1427 Core DNA Replication Machinery Family AT1G08130 36.944 5.86e-159 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00141 - - gmx:100807673 2367.42