Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00109 ATGAGTGTTCGGTCCAAAAACTTGAGCTCAGTATTCTATGCAGATTCGTACCATCCGATTCAAGCTGGCAGCATCGACGGCACCGATGTTGTTCCTCACGACAATGCCGTTTATCGTGCTCAACTCTGTTCCTCCATTGGCCTCTATGACCCACATGGTGATCCTAAGGCCACTGGAGACCCTTATTGCACTCTCTTCGTTGCTCGTCTCTCTCGCCTCACCACCCAAGATACTCTCCACAAAGTTATGAGTAAGTATGGCCAGGTGAAGAACTTGCGCTTGGTCAGGGACATTGTGACAGGAGATTCTCGTGGTTATGCTTTTGTTGAATATGAAACTGAAAGGGAGATGCGACGAGCATATATGGATGCTCATCATTTGATTGTTGATGATTGTGAAATCATAGTTGATTACAACAGACAGCAATTGATGCCTGGATGGATTCCTAGAAGGTTAGGTGGTGGTCTTAGTGGTAAGAAGGAATCAGGGCAACTTCGTTTTGGGGGAAGAGAAAAACCATTTCGTGCGCCCTTGAAATCAATCCCATATGAGGAGTTGAAGAAGCTTGGCATACCCCCTCCGCCTGAGGGAAGATACATGTCACGGTTTCAGGTTCCATCGCCTCCTAGAAGAGAAAGGAGCCTTTCAGACAGGGAAGAAGACTCTCATAGACATAGAAGGGGATCCGAGGACAGATACAGGAAGGAAAATGCCCTCAGAAGTTCAGTGGACATCAAGGAAGAGCACTACAGAAGGAGTTCAAGACACCGAGATGATGATCACTCCCGTGGAAGGAGCTCATCAGAGAGGAGTGGTCGTTACCATGAGAGGAGTTCATCCGAGAAAGAACATCTTCACCGGAGATATACAGACAAAGACAACAGAAGTTCATCTGAGAAAGGACATAGACACAGAAGTTCTACTGACAAAGACAAACATTCTCGGAAGAGAAAAGAAAGAGATGAACGGTCTCAAACGCAGGGAAAATACAGTCGCCATTCCCCTCACGAGGACTAA 1017 0.4661 MSVRSKNLSSVFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGLYDPHGDPKATGDPYCTLFVARLSRLTTQDTLHKVMSKYGQVKNLRLVRDIVTGDSRGYAFVEYETEREMRRAYMDAHHLIVDDCEIIVDYNRQQLMPGWIPRRLGGGLSGKKESGQLRFGGREKPFRAPLKSIPYEELKKLGIPPPPEGRYMSRFQVPSPPRRERSLSDREEDSHRHRRGSEDRYRKENALRSSVDIKEEHYRRSSRHRDDDHSRGRSSSERSGRYHERSSSEKEHLHRRYTDKDNRSSSEKGHRHRSSTDKDKHSRKRKERDERSQTQGKYSRHSPHED* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00109 338 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 12 234 - -
Phac8g00109 338 SUPERFAMILY RNA-binding domain, RBD 49 169 IPR035979 GO:0003676
Phac8g00109 338 Gene3D - 50 171 IPR012677 -
Phac8g00109 338 MobiDBLite consensus disorder prediction 211 338 - -
Phac8g00109 338 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 50 171 - -
Phac8g00109 338 MobiDBLite consensus disorder prediction 185 338 - -
Phac8g00109 338 MobiDBLite consensus disorder prediction 151 171 - -
Phac8g00109 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Phac8g00109 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Phac8g00109 338 SMART rrm1_1 64 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00109 Phac-Chr8 743498 746981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00109 65 136 Eukaryotic Initiation Factors Gene Family AT2G23350 31.944 8.75e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00109 K13155 - gmx:100814109 522.316