Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00038 ATGGCTTCATCTTTGGAGGAGCTTCTTGCGGAGGAGGGGTTCAAAGGAATCAGAAGAGTGCAAAGGTCTAGATCTTCCTTCCACTATGGTGCTTCAAGCGAACCTCTTTACTCTCTGGAAGGCAGATTTAGTGTATCAAGTGAAAGAATTCGACCGCAGAGACAAAAGTCTGATGCCTCACTATATCAGATCACAAGTGGACTTTTGAAAACCGACCCTCATACTGCAAAGAACAGGAGATCCAGGGATAATATTATTTTGAGAGAAGAAGTGGATGAAAGGTTGAAGATTGAAGCCGTGAAGAACTCTTCAAGCCATGCTGATTCAGGTGAAGAAGTTCATACCAAATCGTCAGAACACATGCCAAGGGATGAAATTACTGAGTTGAATGAACAAGAAGCTAGCAGAGTTGAAGATACTTATTCAAACGAAGTGGCTGCAAAAGGAGGCAAAGAAAAGAATCTCCATGAACTTGTGGAAGACAAAATATGGAGGGAAAAGCCTGCAAAGGTGCAAAGCAGAAGTTCCAGTATAAATATGCGTAAATACTCTAACAGCAAGAGCTTTGAATACAACAGCAGGAAGAAAAATAGCAATCTTGAAGTGCAAGTAGCTTCTGGTCTTGCTCTTGATGAAGTAGCAATCCAAGCCGTAGTTTCCATTCTAAATGGATATATAAAGTGTTTTCCAAAAGATGAGGAGTTTCGGTCTACATTGCACCACAGATGTTTCTCCTCCTTGAATTTTCTTGAACTGAAAGAAGAGAAAATTTCTCAGAGCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAATCCGTGGGGGAACCTGCATCTGCCATGTCTCTGAAAAGAACAACGATGCAGCTTAGTATTATTACAGGTTTGAGTTTAAATGATTTGAAATACGAACATACGTGTCGGATACCGAATTATAAGTTGTCAGCTTGTGCTCATCTTTACCTCAGTGTGGTATACATGATGCAGAAAAAGAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCACGGACTATACTGTTGCCTGAACTGTGGGAGCATCTATTTTCACCACAATTTTCTCATTTGAAAGCATGGTATGAGAAGGAAGAAGAAGTTCTAGTAGACACACCAAACAAAACAAGAAGGCTAAAGCTTCTTCAAGAAGTGTATAATGAGCATTTGGATTCTGGAACTCATATATTTGCTATATATTACAAAGATTGGCTCACTGAAGGAGTGGAATCTCCAACAATTCCTTCAATTGGCATTCCATCAGTTTCTGTCACAGGAAGTCAAGAGGGAAGTTCACTTGGTCATTCTTTTGAGTCTGCTAGCTCCATTGATCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTTTGGTAGACCTGGAGTTTACCAAGTCAAAGATGTTAAGGATGATGGTAACCAAGACAACTGTGTGAAAGGCTCTTATGGTTCAACATTTGTTAAACAGACCTTAACATATGAGTCTGAAACTGTCAAGTTTACAGATCAAGATATTGAGGGTTTCTCTCAAGGTGTAGCTATTGATACAATCAAACCACACAAAGGAAATTTAGTGGCAGCTGCAGAAGAATGGCAGAAAAGGAATGTCACTGATGACATTAATAACTCTTTCTCTATGCAAACTAATTTAAAGAATCACATTGTTGATGCCCTGCCGTATGAAAAAGCAAATGATCTTAAAAAGCCAAACAAGACTAGTTATGCTCTTCAAGGATCAGATTTTCCAAGCATTCCACAGGAATTTATTTGTTCTCTTACTGGGAATCTCTTTGAGGAACCAGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAAAGGCCATCAAAGCATGGTTTGAAAAGGGAAACAGAACTTGCCCTGTAACAGGAAATGCTTTGGAATGCTTGGCCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAGGTCAGAACGTTTTGATTACCTTCTTGATCTTGCTTCCCAAAGAGTGGAGAATTCAGAGGAGCTTATGTTGAAAAAAGGGGATGAGGCTGCTGTTTTCAAGTTAGAGAGCCTTTTCTCCTCTTTGAAAGAAGAGGAGAAATCAACTTATGTTAAGCATCTCATCTCTTTAGGAGTTCTTCCATTTCTTTTTAGGAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACTAGTGGTGTCACTCTTGCTAAATTGTATTCAAGTAGACTCTGGTTGCCTATATACTATAGCAAGGAGTGTTAACAGAAAATGTCTTCTTGAGCTTCTTAGCAGCAAGAAGGCTACCCCAACAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGGCTTGGCGGGTGAAGAAGTATTTAATATAATGCACATTCTGCTCCTGTATCTCAAGAATTCTTCTCCATTTGAAAAGCCTCTAATTGCTGTCCTTTTGTTACACTTTGATCTGCTGGTTGAGCCGCAAAAGTTTAGTGCATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATGGCAGCTTAAACAATGAGAAGGCCCGAGAAAAGTGTTGCAGAGCACTATTAATCTTGTGTGGCCATTTTTCTTCTACTGGAAAGATACCAACCAAGACTAGCATCTTAAAACAAGCAGGTTATAATCATGATAGCGTAGAAGTGAAGCCTCATGGCCATCAAAAAGAGGGTCAACAGTCAGAAGTAACCATTTCATTGGAAGATGAAGACAAAAGGGTTGAAGAGTTGCTAAAGAAGCTGTTAGAGTCGTTGATTGGTGATGGAGAAGGCCCATTTTTGAAGAGCATATCCAGATGTTTGGATTGTAAGCACCTAGATTTGGTGAGGGCGTGTCTAATAACTGTGACATGGTTGAGCTCTTCTCTATCTACACTATTTGGTGCTGGATTGCCTCTTCCCACCTTCTCATCCATCATCTCTCAGTTGAAAGGAATCTTGGAAGATGGAGAACTTGAGCTCAAGGCTCTGGCTTCTTTGTCTTTGCTAAATTTCAGTAAAATATCAGAATGCAAAACGGTTATGAAGACTATGACAGAAGATGTTGCCCCCCTTCTTCATGGACTTGCTGAGGTAACATGGACTGCAAAACAGCTGCATGCTGCTGTTTCTAGAGAGAATTTGTAG 3249 0.4004 MASSLEELLAEEGFKGIRRVQRSRSSFHYGASSEPLYSLEGRFSVSSERIRPQRQKSDASLYQITSGLLKTDPHTAKNRRSRDNIILREEVDERLKIEAVKNSSSHADSGEEVHTKSSEHMPRDEITELNEQEASRVEDTYSNEVAAKGGKEKNLHELVEDKIWREKPAKVQSRSSSINMRKYSNSKSFEYNSRKKNSNLEVQVASGLALDEVAIQAVVSILNGYIKCFPKDEEFRSTLHHRCFSSLNFLELKEEKISQSKVIRSLEQAIEAIEQSVGEPASAMSLKRTTMQLSIITGLSLNDLKYEHTCRIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTILLPELWEHLFSPQFSHLKAWYEKEEEVLVDTPNKTRRLKLLQEVYNEHLDSGTHIFAIYYKDWLTEGVESPTIPSIGIPSVSVTGSQEGSSLGHSFESASSIDPFSPQPMVSKKLYDSMFGSFGRPGVYQVKDVKDDGNQDNCVKGSYGSTFVKQTLTYESETVKFTDQDIEGFSQGVAIDTIKPHKGNLVAAAEEWQKRNVTDDINNSFSMQTNLKNHIVDALPYEKANDLKKPNKTSYALQGSDFPSIPQEFICSLTGNLFEEPVTLETGQTFERKAIKAWFEKGNRTCPVTGNALECLAMPFTNLILKRLIDNWRSERFDYLLDLASQRVENSEELMLKKGDEAAVFKLESLFSSLKEEEKSTYVKHLISLGVLPFLFRRFEQGNVEEKSLVVSLLLNCIQVDSGCLYTIARSVNRKCLLELLSSKKATPTTNAILFLTELLSMKRRKDVTSFISGLAGEEVFNIMHILLLYLKNSSPFEKPLIAVLLLHFDLLVEPQKFSAYREVAVNAIAEALDGSLNNEKAREKCCRALLILCGHFSSTGKIPTKTSILKQAGYNHDSVEVKPHGHQKEGQQSEVTISLEDEDKRVEELLKKLLESLIGDGEGPFLKSISRCLDCKHLDLVRACLITVTWLSSSLSTLFGAGLPLPTFSSIISQLKGILEDGELELKALASLSLLNFSKISECKTVMKTMTEDVAPLLHGLAEVTWTAKQLHAAVSRENL* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00038 1082 ProSiteProfiles U-box domain profile. 605 680 IPR003613 GO:0004842|GO:0016567
Phac8g00038 1082 SUPERFAMILY RING/U-box 602 676 - -
Phac8g00038 1082 SUPERFAMILY ARM repeat 702 1048 IPR016024 -
Phac8g00038 1082 MobiDBLite consensus disorder prediction 99 124 - -
Phac8g00038 1082 Pfam U-box domain 606 676 IPR003613 GO:0004842|GO:0016567
Phac8g00038 1082 SMART Ubox_2 609 673 IPR003613 GO:0004842|GO:0016567
Phac8g00038 1082 PANTHER OS04G0584500 PROTEIN 595 1080 - -
Phac8g00038 1082 CDD RING-Ubox_PUB 607 655 IPR045210 -
Phac8g00038 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 680 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00038 Phac-Chr8 301324 309192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00038 578 673 U-box Gene Family AT1G29340 37.755 1.84e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00038 - - vra:106758533 1649.8