Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04349 ATGGTATTTGAGAGTGATCTGAACCTGAAGGCAACAGAACTTAGATTGGGGTTGCCAGGGACAGAGGAAAAGGAAGACAAAAACCTGCATGCACATGTTGTTGTTAGAAACAACAAAAGGCAAGTGCGTGAAACTTCTCAAGACTCTGTTTCCATTTCCAAGGCCTCACATCACCAACAACGTGTGGACACTCTTTCAGCCCCTCCACCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGTGTGCAGGAGGGTGAGGGGGATGGGATCTATGTGAAAGTGAGCATGGATGGAGCACCTTATCTCAGAAAGATTGATTTGAAAGTCTACAGGGGCTATCCAGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGGCTATAGGTGACTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCTCCTACATATGAGGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGATTTCTTGCAAAAGGCTAAGAATCATGAAAGGCTCGGAAGCAAGAGGGCTGGGTTGTGGTGTATGA 579 0.4594 MVFESDLNLKATELRLGLPGTEEKEDKNLHAHVVVRNNKRQVRETSQDSVSISKASHHQQRVDTLSAPPPKAKIVGWPPIRSYRKNSVQEGEGDGIYVKVSMDGAPYLRKIDLKVYRGYPELLKALETMFKLAIGDYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVISCKRLRIMKGSEARGLGCGV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04349 192 Gene3D - 90 192 - -
Phac7g04349 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
Phac7g04349 192 Pfam AUX/IAA family 12 189 IPR033389 -
Phac7g04349 192 SUPERFAMILY CAD & PB1 domains 85 181 - -
Phac7g04349 192 MobiDBLite consensus disorder prediction 40 68 - -
Phac7g04349 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 186 IPR003311 GO:0005634|GO:0006355
Phac7g04349 192 FunFam Auxin-responsive protein 90 192 - -
Phac7g04349 192 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04349 Phac-Chr7 42463306 42465550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04349 98 188 B3 DNA Binding Superfamily AT2G46530 37.363 6.01e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac7g04349 AUX_IAA 1.4e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04349 K14484 - gmx:100800212 316.62