Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04242 ATGCCTCTGAGGACAAGTGTTGGAGATGGTTCTCGTATTAGTATATCAAGTATTAGTCACTCAAGTAGTGTGGGGTCAGGAATAGATGACATAGAATCTCTTGGTGATGTTTTTATATGGGGAGAGGTTTGGGGAGATGGCAGTTCATCTGATGGATTGGGGAATCAAACTACTGGTAAGATTGATGTGTTGATTCCTAAGCCATTAGAATCTGATGTTGTTCTTGATGTTAATCAGATAGGGCCCGGTGTTCGTCACATTGCTTTAGTTACAAGGCAAGGTGAGGTTTTTACATGGGGAGAGGACTCTGGTGGAAGGCTCGGACATGGCTGTGAAAAAGATTTTGGTCGACCTCATCTTGTAGAGTCCCTAGCAATTACCAACGTGACTTTTGTTGCATGTGGGGAATATCATTCATGTGCCGTGTCTCTATCTGGTGACTTGTTCACCTGGGGTGATGCTACAACTTGTGCAGGACTTCTTGGTCATGGCAGTGATGCTAGCTACTGGGTACCAAAGAGGGTGTGTGGCCCTTTAGAGGGACATCAGGTTGTATCCGTAGCATGTGGCGCATGGCATTCAGCATTAGCAACCTCCCATGGGAAATTGTTCACCTTTGGTGATGGAAGATTTGGTGTATTAGGCCATGGAGATCGCGAGTGTGTATCATATCCAAAGCAGGTACAATTATTGAGTGGACACAAGGCTATTAAGGTTGCATGTGGAGTTTGGCATTCAGCAGCTATCATAGAGATTATGGACTCTTCTGCTTCAAACCTTTCATCCAAGAAGATCTTCACATGGGGTGATGGTGACCAGTATCGTTTGGGTCATGTCAACAAGGAAAACTACCTTCAACCAACTTGTGTAGCTGCCCTTGCTGATTATAGTTTTAACCAGATTGCATGTGGCTACACTATGACTGTTGCACTCACTGTATCTGGTCATGTTTTTACAATGGGAGGCACAGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTCCCAGTTCTAGTCCGAGATAAGTTGGTAGGTGAATTCGTGGAGGAAATAGCATGCGGAGCAAATCACGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGTAGAGGTGCCAATGGAAGACTTGGACATGGAGACACAGAAGACCAGAAAACTCCAACCTTGGTCGAAGGCTTGAAAGACAGACATGTTAGGAATATCTCATGTGGCTCTACCTTTACATGTTGCATATGCTTACATAAATGGCTTTCTGGTGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACCCGAAAAAGGCATAATTGCTATCATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTCCAAAGCAGCATTGGCTCCGACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTTCTGATAATGCTTCAACTTTAACTAAAGAAATTAGTCGTCCTGCAAGTTCTGTATATGGAAGGGACAAATTTGAGCGGGGAGAGGTCAAGTCTTCCAGAGTTCTCTTGCCTCCCATCACAGAACCAATAAAGTACCTTGAGATTAGGAATACTAAGCATGGAAATATAGATGACACTTCTTCCATTGTCCGAGCATCTCAAATTCCTACGAGTTTGCAATTGAAAGATATTGCATTTCCAATTTCTCTGAGTTCTGCACAGAATTTTTTCAAGCCTCTTATGCAGCCAACTCAACCTCAACCTCCACCTTCACTAACTTCAAGAACTATCTCACCATATGCTAAAAAAAGACCACCAAGCCCACCTCGTTCTACCTCCCCTGGATTTTCAAAAGGCCTTATTGATAATTTAAAGAAGAAAAATGATCATATCAATCAAGAAGTCTCAAAATTGCAAAACAAGAATAAATGTTTAAAGCAGAAGAATGACACACAAGAAATGACGATTCAGGAGCTTCAGAAAATTATTGAAGAGGAATCTTCTAAGCTTAGAGAAGCAAAGTATTTTATTAAGTCCATGACAGATAAGTTGAGGGAAGTGATTGAGACTTTGCAATCTGAGATTCCTGACAATGAGACTTTGAGGACCATGCATGCTCAAGCTGAAGAATTTCTTAATGAAGAAAAACATTTGGAACCTTCTTCCTCCTCACTGAGCCTTGAGTCTGAGCCACAAAGTGCACCTGATAGAAACTCTTTAAAGGTACAAGGGCGAAGAATGGAAGGAAATGATGATGCTTCTGGGGCCCCAGACGGAGAAAAAACTTGTGAAGAAATCAGCAACTCATCTACATCTAGTACAGGAGTGACTCCAGCAAGCTCAAGAAAATTTTCAAGATTAAGGGACCCTAGTATACATGTGACAGAAGGAGAAAGATCAGTCATTGAACAATTTGAGTCAGGTGTTTATGTCACCCTCGTTGTACTACCTAGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAATGAACAAGAAGCAGAAGAATGGTGGAGCCAAAACAAAGATAAGGTGTATAGTAAATACATTCCACCACCACCACCCACAAAAAATACAATTAGTGGACCATCTGTTACCTCTCCAAAAGCTGAAGAGAATAGTGAGACATTACCTTCTTCCTAA 2652 0.4155 MPLRTSVGDGSRISISSISHSSSVGSGIDDIESLGDVFIWGEVWGDGSSSDGLGNQTTGKIDVLIPKPLESDVVLDVNQIGPGVRHIALVTRQGEVFTWGEDSGGRLGHGCEKDFGRPHLVESLAITNVTFVACGEYHSCAVSLSGDLFTWGDATTCAGLLGHGSDASYWVPKRVCGPLEGHQVVSVACGAWHSALATSHGKLFTFGDGRFGVLGHGDRECVSYPKQVQLLSGHKAIKVACGVWHSAAIIEIMDSSASNLSSKKIFTWGDGDQYRLGHVNKENYLQPTCVAALADYSFNQIACGYTMTVALTVSGHVFTMGGTAYGQLGNPNSDGKVPVLVRDKLVGEFVEEIACGANHVAVLTSRSELYTWGRGANGRLGHGDTEDQKTPTLVEGLKDRHVRNISCGSTFTCCICLHKWLSGVDQSVCSDCRQPFGFTRKRHNCYHCGLVFCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKGSDNASTLTKEISRPASSVYGRDKFERGEVKSSRVLLPPITEPIKYLEIRNTKHGNIDDTSSIVRASQIPTSLQLKDIAFPISLSSAQNFFKPLMQPTQPQPPPSLTSRTISPYAKKRPPSPPRSTSPGFSKGLIDNLKKKNDHINQEVSKLQNKNKCLKQKNDTQEMTIQELQKIIEEESSKLREAKYFIKSMTDKLREVIETLQSEIPDNETLRTMHAQAEEFLNEEKHLEPSSSSLSLESEPQSAPDRNSLKVQGRRMEGNDDASGAPDGEKTCEEISNSSTSSTGVTPASSRKFSRLRDPSIHVTEGERSVIEQFESGVYVTLVVLPSGYKVFKRIRFSKRRFNEQEAEEWWSQNKDKVYSKYIPPPPPTKNTISGPSVTSPKAEENSETLPSS* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04242 883 SUPERFAMILY FYVE/PHD zinc finger 419 489 IPR011011 -
Phac7g04242 883 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 26 683 - -
Phac7g04242 883 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Phac7g04242 883 MobiDBLite consensus disorder prediction 578 618 - -
Phac7g04242 883 MobiDBLite consensus disorder prediction 863 883 - -
Phac7g04242 883 MobiDBLite consensus disorder prediction 762 780 - -
Phac7g04242 883 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 254 - -
Phac7g04242 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 495 IPR013083 -
Phac7g04242 883 Coils Coil 620 668 - -
Phac7g04242 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Phac7g04242 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Phac7g04242 883 MobiDBLite consensus disorder prediction 717 738 - -
Phac7g04242 883 MobiDBLite consensus disorder prediction 714 785 - -
Phac7g04242 883 MobiDBLite consensus disorder prediction 740 758 - -
Phac7g04242 883 Pfam FYVE zinc finger 419 484 IPR000306 GO:0046872
Phac7g04242 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Phac7g04242 883 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Phac7g04242 883 SMART fyve_4 418 486 IPR000306 GO:0046872
Phac7g04242 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Phac7g04242 883 ProSiteProfiles BRX domain profile. 798 853 IPR013591 -
Phac7g04242 883 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Phac7g04242 883 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Phac7g04242 883 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Phac7g04242 883 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Phac7g04242 883 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Phac7g04242 883 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Phac7g04242 883 Pfam Transcription factor regulating root and shoot growth via Pin3 798 852 IPR013591 -
Phac7g04242 883 Pfam Regulator of chromosome condensation (RCC1) repeat 94 142 IPR000408 -
Phac7g04242 883 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Phac7g04242 883 Pfam Regulator of chromosome condensation (RCC1) repeat 265 311 IPR000408 -
Phac7g04242 883 Pfam Regulator of chromosome condensation (RCC1) repeat 201 249 IPR000408 -
Phac7g04242 883 Pfam Regulator of chromosome condensation (RCC1) repeat 368 415 IPR000408 -
Phac7g04242 883 Pfam Regulator of chromosome condensation (RCC1) repeat 145 196 IPR000408 -
Phac7g04242 883 Gene3D - 4 253 IPR009091 -
Phac7g04242 883 Gene3D - 254 421 IPR009091 -
Phac7g04242 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Phac7g04242 883 MobiDBLite consensus disorder prediction 846 883 - -
Phac7g04242 883 SUPERFAMILY RCC1/BLIP-II 41 420 IPR009091 -
Phac7g04242 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04242 Phac-Chr7 42017394 42024820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04242 784 853 Major Intrinsic Protein MIP AT1G31880 38.028 4.97e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04242 - - gmx:100778984 1350.5