Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04225 ATGGATTTTGTAAGCCAAAGACACCTACTCCATGTACCAACACAAGCTAATTCACCTTGCACAACTCCTCCAAATCATGATATTACACATCCTTCTGGTTCAAATTTTCCCCTCTTAGCAATCCTTGTGGTAGGAATGATGTTCACAGCTTTCTTCCTTGTAGGCTACTATATGTTAGTTGTCAAGTGCTGCTTCAATTGGAACCATGTTCATCACAGAAGCCTATTTTCTTTATCCAGGCAAGGTGAAGATCCATCTGCTGGACATTTAACAGCATCTGAGCCAAGAGGGCTAGAGGAAGCAGTGATCAGGTTAATCCCTGTGATTCATTATAAGCCAGAAGATGGAGACACAAACTCTGGTGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTGGCCATGTCTTTCACATTGATTGCATTGATGTTTGGCTTCAGAAAAATACTCATTGCCCCCTTTGCAGAAGAATTGTGTCCTTGACAAGCCAAGTCCTTGTTGACCAACTAAACCTTCTCTATCCAAGATCTTCCCACCAAAGCCAAAACATTGAGAACCATGTTGGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAACTTGGTAATAGAGAGCAGAACTTGCAAGGAAGAGAAGAGTTACTACCAACCATTGGTGTTTTGTTGGAGCAGAAGAAAGCAAAGAAGCTTCATAAGGTGAGCAGCTTGGGAGATGAGTGTATTGGCATTAGAGGGAAAGGTGAAAGGGTCTCAGTTGAAGCCATGAGAAGGTCTTTTTCCATGGATTCATCAGTGGATAGAAAGTTTTATGGAGCAATTCAACATGAGATTAACACAGTTGAAGCCTGTGGTGGCAGTGGTAGAGTGAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAGTGCTGCTGTACAATCTGTTTATTTGGACCCCTGA 975 0.4185 MDFVSQRHLLHVPTQANSPCTTPPNHDITHPSGSNFPLLAILVVGMMFTAFFLVGYYMLVVKCCFNWNHVHHRSLFSLSRQGEDPSAGHLTASEPRGLEEAVIRLIPVIHYKPEDGDTNSGDCAVCLSEFQQDEKLRVIPNCGHVFHIDCIDVWLQKNTHCPLCRRIVSLTSQVLVDQLNLLYPRSSHQSQNIENHVGDEGFVVIDLDGELGNREQNLQGREELLPTIGVLLEQKKAKKLHKVSSLGDECIGIRGKGERVSVEAMRRSFSMDSSVDRKFYGAIQHEINTVEACGGSGRVKRSFFSFGHGSRSRSAAVQSVYLDP* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04225 324 CDD RING-H2_EL5-like 122 165 - -
Phac7g04225 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 169 IPR013083 -
Phac7g04225 324 SUPERFAMILY RING/U-box 112 171 - -
Phac7g04225 324 SMART ring_2 123 164 IPR001841 -
Phac7g04225 324 Pfam Ring finger domain 122 165 IPR001841 -
Phac7g04225 324 PANTHER RING-H2 FINGER PROTEIN ATL16 14 318 IPR044600 GO:0016567|GO:0016740
Phac7g04225 324 FunFam E3 ubiquitin-protein ligase ATL6 87 171 - -
Phac7g04225 324 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04225 Phac-Chr7 41919984 41921133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04225 29 324 C3H Transcription Factor Family AT1G04360 41.595 8.05e-73 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04225 - - pvu:PHAVU_007G272700g 631.713