Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04220 ATGGAGGAAGAAGAACCTTCCATAACATCGCCACTTCCAGGAACGTTACACAAGTTCCTCCCCCGCAGTTCCAAGCCTGTCTTCGCCCCGACGCCTCTCGCAGTGGTCCGCTCCACCACCAGCAACGGCGGCGCGCGCGTTCATGCCGCGCCGCAAAACCCTAACGAGAACGATCCTCTCCAGGAAGAAGGACAGGGCGAAACCGGCTTCGATGTTTCTTATTTCACCGCGCTGAAGAAAAAGCAACAACAACAGCACAGGCTTAGGCTCGAGGACACAATGTTCGAGGCCAAAGGAGAGTCTCTGAAATCGAAGGCGCCAATGGAAGAAAGACTAGAAGAAGAGGAGGAGGAAGGCGAAGAGGCCGAATCAACTCCACCGGTTCAACCGGTGCCGAGAGTGTCAGAACCGGTTCGACCTGTGAAGAAAAGAACGGTTACTGAGGACGTGGAGGTTGTGGAGGTGCGGAAGACTGTGGAGAAGAGGAATATTCCTAATCTCGAGGACGGGGAGTTTCCGGAGGAGGCTGGATGGTTCTTGCTTGGGAGGAAGGTTGAGGTTGCGGTTTCGACGGCCAGAGGAGTGAACAGGTTGGTGGACAATGAAATCCTTCATTTCAACTTTCCTCTTCCGACTTACTCGAGGAAGTCTCAGTTGATCGTTCGTGTTTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGGTTGTGATTCCGCTTATGCTCTCCGGAAAGGTGAAGGTTCGAGGTCGATGCATTGCTGCCCCAGATAAACTGGAGATGATGCAAGAGATTATGTTGTTAGTAAGTTTTTATATTCACAATTCTGTATTTGCCGACCGAGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATATACCCACTCCTTGCACTACTAAAAATGCTAGAGATCAGGCCATCCCAAAAGGCTGAATTCACACCAGAAGATATAGATTCTCGAAAACGGTTGCTCTATCCGAGTGCTGAGTTAGATGAAGCTGCAGGATTGCCTTTGATCAAGCGAAGAAAGGGTGGTGAGCCTATTCCAGAGCAAACTAATGACGAACAAGCTCTTTCAGAGTCAGCTTTGAACAAAATTGTTGGAGCGGCAGAATTCTATGACTTAAAGGAGAAGGAAGCCCCAAAGGCACTTATGTGTAATTTAAAGCCTTACCAGAAGCAAGCCCTGTATTGGATGGGTGAAATCGAGAAGGGAATGGATGTTGAGAGTGCAGGAAGAAATCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGACTATTTATGTCAATATATTTACTGGCGAAGCTTCAAGGAAATTTCCCAAATCAACTGAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCATTATGACGATTGCTCTGGTACTCAGTAATCCAGGCAGAGGCAACTCAGAAAACAAGGATGCGTTGAATGGATATGATGATCTTATCGCAAATAAAAGAAATATGAGTAAAGTCGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAATGCATTCAAAGCCCGGTAGTGTATCCATATTTGTTCATTATGGTGGCGGAAGAACCGATGATCCCTTGTTCATCGCAGGTCATGATGTTGTCTTAACAACTTATGGGGTCCTATCAGCTGATTACAAAAATAATGGAGACAATAGCATCTACCACAAGGTCCAGTGGTACAGGGTGGTGCTGGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGGTTTCCCAGGCTGTTTTTACTCTCTCATCACGCAACCGCTGGTGTCTAACTGGAACGCCTCTTCAGAATAGCTTGGAAGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAGAAGTTGATTCAAAGACCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAAGCCATTTTGAGGATGATAATGCTAAGAAGAACGAAGGAATCGAAAGATAAAGAGGGAAGGCCTATACTTTTCCTGCCTCCAATCGATATTGAATTCATTGAATGTGAACAATCAGAATCTGAACGTGACTTCTACGAAGCCCTTTTCGAGCGATCTAAAATTCAATTTGATCAGTACGTTGCACAAGGAAAGGTTCTGCACCATTATGCCAATATCCTTGACCTTCTAATGCAGTTGAGGCGCTGTTGTAACCATCCGTTTTTGGTTATGTGTGAAAGCAATTCCCAGAAGTATGCAGACTTGAGCAGACTCGCAAGAAGATTTCTTCAGTCTAATACTGAATCATCCAACGAAAGCAATCAAGATGATCCACAGCACAAAGCAGAGTTGAACAAACTCGCAAGTACATTACTTCTAAAATCCGCTTCTTCGCACTCTATCCAACCTCGTGCATACATTGAAGAGGTTTTGGAGAATATTCAAAACGGCGACATTGTAGAATGCTCTGTATGTTTGGAATCTCCAGAAGATCCTGTGTTTACACCGTGTGCTCATAAATTTTGTAGAGAATGTCTGTTCAGTTGCTGGGGCACCTCATCGGGTGGCAAATGTCCAATCTGTCGAAAATTGCTCCAGAAAGATGATCTCATCACTTGTCCAGCTGAAAGCCCGTTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCGAAGGTTTCAAAGCTATTCGAATTCCTGGAACGTATTCTGAACTCACCCTCGGGTGAAAAGAGCATTGTCTTCAGTCAATGGACTTCATTTTTTGATCTCTTGGAAAATCCATTGAGGCGGAGAGGCATTAGCTTTTTGAGATATGATGGAAAATTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATAAAACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTGAAGGCTGGTGGTTTTGGCTTGAACTTAACTGCAGCGTCGAATGTTTTCATTATGGATCCATGGTGGAATCCTGCTGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGCAGAGTTAAAGTGAGAAGATTTGTTGTGAAGGACACGGTGGAAGATCGGTTGCAACAAGTGCAGGCGAGGAAACAGAGGATGATATCTGGTACCCTCACCGATGATGAGGTTCGGTCTGCTAGGATCCAAGACCTCAAAATGCTATTCACTTGA 3237 0.4544 MEEEEPSITSPLPGTLHKFLPRSSKPVFAPTPLAVVRSTTSNGGARVHAAPQNPNENDPLQEEGQGETGFDVSYFTALKKKQQQQHRLRLEDTMFEAKGESLKSKAPMEERLEEEEEEGEEAESTPPVQPVPRVSEPVRPVKKRTVTEDVEVVEVRKTVEKRNIPNLEDGEFPEEAGWFLLGRKVEVAVSTARGVNRLVDNEILHFNFPLPTYSRKSQLIVRVSTKRSGEVGRMPMEWAKVVIPLMLSGKVKVRGRCIAAPDKLEMMQEIMLLVSFYIHNSVFADRVDTSWRLEACGKIDDTIYPLLALLKMLEIRPSQKAEFTPEDIDSRKRLLYPSAELDEAAGLPLIKRRKGGEPIPEQTNDEQALSESALNKIVGAAEFYDLKEKEAPKALMCNLKPYQKQALYWMGEIEKGMDVESAGRNLHPCWSAYTICKGRTIYVNIFTGEASRKFPKSTEMARGGILADAMGLGKTIMTIALVLSNPGRGNSENKDALNGYDDLIANKRNMSKVEGGTLIVCPMALLGQWKDELEMHSKPGSVSIFVHYGGGRTDDPLFIAGHDVVLTTYGVLSADYKNNGDNSIYHKVQWYRVVLDEAHNIKAHRSQVSQAVFTLSSRNRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYENGDPRSLKLVKAILRMIMLRRTKESKDKEGRPILFLPPIDIEFIECEQSESERDFYEALFERSKIQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCESNSQKYADLSRLARRFLQSNTESSNESNQDDPQHKAELNKLASTLLLKSASSHSIQPRAYIEEVLENIQNGDIVECSVCLESPEDPVFTPCAHKFCRECLFSCWGTSSGGKCPICRKLLQKDDLITCPAESPFKVDIKNNVTESSKVSKLFEFLERILNSPSGEKSIVFSQWTSFFDLLENPLRRRGISFLRYDGKLTQKQREKVLDEFNKTREKRVLLMSLKAGGFGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVKVRRFVVKDTVEDRLQQVQARKQRMISGTLTDDEVRSARIQDLKMLFT* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04220 1078 ProSitePatterns Zinc finger RING-type signature. 856 865 IPR017907 -
Phac7g04220 1078 FunFam DNA repair protein RAD5B 452 684 - -
Phac7g04220 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 1067 IPR027417 -
Phac7g04220 1078 SUPERFAMILY RING/U-box 826 887 - -
Phac7g04220 1078 ProSiteProfiles Zinc finger RING-type profile. 841 881 IPR001841 -
Phac7g04220 1078 CDD SF2_C_SNF 903 1026 - -
Phac7g04220 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 683 IPR027417 -
Phac7g04220 1078 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 212 1078 - -
Phac7g04220 1078 SMART helicmild6 942 1025 IPR001650 -
Phac7g04220 1078 SMART ultradead3 395 662 IPR014001 -
Phac7g04220 1078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 914 1078 IPR001650 -
Phac7g04220 1078 Coils Coil 105 125 - -
Phac7g04220 1078 Gene3D - 453 695 IPR038718 -
Phac7g04220 1078 SMART HIRAN_2 181 278 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phac7g04220 1078 Pfam HIRAN domain 193 272 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phac7g04220 1078 Pfam Zinc finger, C3HC4 type (RING finger) 841 880 IPR018957 GO:0046872
Phac7g04220 1078 MobiDBLite consensus disorder prediction 1 66 - -
Phac7g04220 1078 Pfam Helicase conserved C-terminal domain 917 1025 IPR001650 -
Phac7g04220 1078 Pfam SNF2-related domain 402 761 IPR000330 GO:0005524|GO:0140658
Phac7g04220 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 836 886 IPR013083 -
Phac7g04220 1078 Gene3D - 699 835 IPR027417 -
Phac7g04220 1078 SMART ring_2 841 880 IPR001841 -
Phac7g04220 1078 Gene3D - 887 1076 IPR027417 -
Phac7g04220 1078 MobiDBLite consensus disorder prediction 34 62 - -
Phac7g04220 1078 MobiDBLite consensus disorder prediction 98 140 - -
Phac7g04220 1078 CDD DEXDc_SHPRH-like 399 683 - -
Phac7g04220 1078 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 455 645 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04220 Phac-Chr7 41890139 41896298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04220 118 1077 RAD5 or RAD16-like Gene Family AT5G43530 60.225 0.0 1206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g04220 SNF2_N 9e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04220 K15505 - gmx:100806677 1687.93