Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04192 ATGTCACTTTATATTGGTAATCTGTCAGAACATTCTCGAAGAGATGAACTGGAACGTGTATTCCGTCGATTTGGCCAATGTAATGTTCAGTTGAAAAGAGATGGCTATGGCTTTGTGGTATTTGATTTCCCTCCTGATGCGGAAAAGGCTCTAAGAGCACTGAAAGGTAGAAATATTTGTGGGGAGGAGTTGACTCTAACGTGGTCCAACAAACAGCCTAATACACATTTTTCTAGATTTTCTAGGGGTGGCAGAAGAAACGGGAATGAGTTTAGAGGGAAAACGGGTTTCAGGGGATGGTCGAATCAGAAGATTGGAAGGGAAAATTCTGTGGATGCGCCTGATGAGGAGAGGGGATATCGTCATGATGATTTTAAAGACTATGTTGGGGAGGAAAAGGATTATGGGGGAGACTTTCCTGATGAAGGGGGTGGAATTATTTCCAAAACGGAGGAAAATGATAGATGGGGTGAGCCAGTTCACGATCTGGTTGACAATGGGAATGGAAATGCGATTGAGTTTGATCGTTATGAGCCTTATCAGGGCCATGATAGGAAGTATGAGAATGAAGATTATCATGTTGGTTACCCTGGTGGTTCTCCTGCAGCCAATTCCCAAGAGAATGTGAGCAGAGCTCATATTGTTGAGGGTACCTCAAATCGTCCAAGTGGGTCAAAGTTCCGTCAAACTTGTTTTAGATGTGGTGATCCAGGTCATAAAATGCGAAATTGTCCGAAAGAACATTCTTCACAGTGGAGATACAGTAGGTTGGGTGTTCGGCAAAATAGTAGAATAGACAAGAGCCATGAAGATGAGAATAAATTTGGATTTGCTTTCCCAATGAGGCACCAGAGAGGAGGAAGGAGGTTATCTGTAACCAGGGAAACGTATCGGCATCAAAGAAAGGAATACGGGGAAAAGAAGCGAAGCAGAAATGAAATTGAATTGCCTAAAAGGTCTAAAGCAAAGATACACAAGAGATCAGTCTCATCCTCTTTGCCATCTGATTACTCTGCATCTCGCTCTCTTTCAAATTCTCAATCTTCAAAGTCATTGCAAAAGTCCAGTTCCCGTTCTAGATCAAGAGCAGTGTCTTCTAGATCACATTCTTCATCATCCAAAATAAGGTCTTTATCCGTATCACTCAATCAGCATTCATCATCTCCAAGCAAAATACAGTTAAATTCAAAAGGCTCATCCATTAATGGTACTGCTGTTGAAACTGTGGATCACTTACCTGCACAGGGGCAGCAAATTGGTGGCTATAATAATTTGGAGTTGGAGATTTCTCAATCCAAGGACACAGGTGTTACTGTAAATGGAAAAGCTGCAGCAGTGTGTGACACATTTGTGTGTGCTGTGGAAAAGAGCCAATTTGTACAGGAGGATAATCATGAAAACCATATCTTCTTAAAATCATCTGACAGAGTTACAGATCTAAATGAACCACCTGTTGAGAATTCATCTCCATTTATAGTAAAAGAGACAGAGGGTCTTAGTCATACTGGACAAAATGTATTGAAACCTTCTCCTGAAACTAATGTTAATCTCCATCCCGACATTTCAACCATTGTATCTATGGAGGATATGCACATGGTTCTTAACAATTATGGCTTGGAAGTTCCAAAAGGCGATGAAAACAATTTAACAGTTGATGCCTTCTTTGGTTGTGCTCGGTTATGGCCTTGGCATCTTGTTTATTACCGTAAGTTGAAGAAAGGTCCAATTTCAACAGAGAATTATGCCAGACGGGTTGCTCAGAATCAGGAATTCGGCATTATAGATAAGTATATAAGAAGCAGCAGCGGGTGGGGAGAGCTTGGTCTTCAGAACTCGTAG 1839 0.4133 MSLYIGNLSEHSRRDELERVFRRFGQCNVQLKRDGYGFVVFDFPPDAEKALRALKGRNICGEELTLTWSNKQPNTHFSRFSRGGRRNGNEFRGKTGFRGWSNQKIGRENSVDAPDEERGYRHDDFKDYVGEEKDYGGDFPDEGGGIISKTEENDRWGEPVHDLVDNGNGNAIEFDRYEPYQGHDRKYENEDYHVGYPGGSPAANSQENVSRAHIVEGTSNRPSGSKFRQTCFRCGDPGHKMRNCPKEHSSQWRYSRLGVRQNSRIDKSHEDENKFGFAFPMRHQRGGRRLSVTRETYRHQRKEYGEKKRSRNEIELPKRSKAKIHKRSVSSSLPSDYSASRSLSNSQSSKSLQKSSSRSRSRAVSSRSHSSSSKIRSLSVSLNQHSSSPSKIQLNSKGSSINGTAVETVDHLPAQGQQIGGYNNLELEISQSKDTGVTVNGKAAAVCDTFVCAVEKSQFVQEDNHENHIFLKSSDRVTDLNEPPVENSSPFIVKETEGLSHTGQNVLKPSPETNVNLHPDISTIVSMEDMHMVLNNYGLEVPKGDENNLTVDAFFGCARLWPWHLVYYRKLKKGPISTENYARRVAQNQEFGIIDKYIRSSSGWGELGLQNS* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04192 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 71 IPR000504 GO:0003723
Phac7g04192 612 MobiDBLite consensus disorder prediction 288 320 - -
Phac7g04192 612 ProSiteProfiles Zinc finger CCHC-type profile. 231 246 IPR001878 GO:0003676|GO:0008270
Phac7g04192 612 PANTHER RIBONUCLEOPROTEIN RB97D 1 606 - -
Phac7g04192 612 Gene3D - 210 263 - -
Phac7g04192 612 SUPERFAMILY RNA-binding domain, RBD 2 98 IPR035979 GO:0003676
Phac7g04192 612 SMART rrm1_1 2 67 IPR000504 GO:0003723
Phac7g04192 612 SMART c2hcfinal6 230 246 IPR001878 GO:0003676|GO:0008270
Phac7g04192 612 CDD RRM_SF 3 66 - -
Phac7g04192 612 MobiDBLite consensus disorder prediction 327 399 - -
Phac7g04192 612 SUPERFAMILY Retrovirus zinc finger-like domains 219 249 IPR036875 GO:0003676|GO:0008270
Phac7g04192 612 Gene3D - 1 109 IPR012677 -
Phac7g04192 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 64 IPR000504 GO:0003723
Phac7g04192 612 Pfam Zinc knuckle 230 246 IPR001878 GO:0003676|GO:0008270
Phac7g04192 612 MobiDBLite consensus disorder prediction 276 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04192 Phac-Chr7 41670835 41674927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04192 3 93 Eukaryotic Initiation Factors Gene Family AT2G23350 31.683 2.42e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04192 - - vun:114192668 1026.54