Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04182 ATGTCCACCGCCGCCGGACCTCCCGACCGCCGTGCCTCGCCGCCGCGGGGGCCTGCCGGCACCCCTGCCCGCCCGCCGCTCAAGCGGCACCTCGCTTTCGTCACCAAACCGCCGTTTGCTCCCCCGGACGACTACCACAGCTTCTCCTCCATTGACTCCCGCCGCCTCGCCGATGAAGCCGTTGTCGTTAGATCTCCATACATAAAGCGAAAGGGTGGAATGAACGACAGTGAAGGAGAGTCTCACGCACAAAAGTGGAGTAACAGTCCTGGATACACTAATATTAGTAACATAACGAGTAGTCCCTTTAAAACTCCAGTGTCTGCAAAAGGAGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAAATGCCGGTTCCCCTTCTCCTCTTACTCCTGCCAGCAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTAACCAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGATCTAAATAAAGCAGCCGAGACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACAAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCCACGTCTGGTGAGGTGGATGGCGATATCTCTGTGCTCAAGGAAGAAGTTGAGAAACTTTCTTTAGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGATTGAGGAGGCTGAGTGAAAAAGAAAGCAACCAGAAGTGCCTTTTCGTGACTGAGGATGATATTAAGAGCCTACCTTGTTTCCAGAATGAAACTTTAATAGCAATTAAAGCTCCGCATGGAACTACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCTCAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTTATCAGGTATGTGTCTTGGCTAGTATTATTTACTGAACTTTTTGGTTTTTTTGTTCTTATGCTGTGCATCCAGAAATCACATTAG 1062 0.4718 MSTAAGPPDRRASPPRGPAGTPARPPLKRHLAFVTKPPFAPPDDYHSFSSIDSRRLADEAVVVRSPYIKRKGGMNDSEGESHAQKWSNSPGYTNISNITSSPFKTPVSAKGGRTQKAKASKEGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKEEVEKLSLEEQGLDDQIREMQERLRRLSEKESNQKCLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLIRYVSWLVLFTELFGFFVLMLCIQKSH* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04182 353 MobiDBLite consensus disorder prediction 80 108 - -
Phac7g04182 353 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Phac7g04182 353 MobiDBLite consensus disorder prediction 126 142 - -
Phac7g04182 353 Coils Coil 225 266 - -
Phac7g04182 353 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Phac7g04182 353 FunFam E2F transcription factor 1 141 214 - -
Phac7g04182 353 MobiDBLite consensus disorder prediction 1 142 - -
Phac7g04182 353 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Phac7g04182 353 Gene3D - 141 214 IPR036388 -
Phac7g04182 353 CDD E2F_DD 225 327 IPR032198 GO:0046983
Phac7g04182 353 Gene3D - 219 329 - -
Phac7g04182 353 SUPERFAMILY E2F-DP heterodimerization region 225 327 IPR037241 -
Phac7g04182 353 PANTHER TRANSCRIPTION FACTOR E2F 82 328 IPR015633 GO:0000978|GO:0006357
Phac7g04182 353 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04182 Phac-Chr7 41599440 41604464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04182 21 327 E2F-DP Transcription Factor Family AT2G36010 63.077 4.29e-127 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phac7g04182 E2F_CC-MB 4.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04182 K06620 - gmx:100811762 575.089