Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04156 ATGGATCAAATCGACGTCCCTCCCTTCTTCCTCTGCCCTATTTCCCTCGAACTCATGAAGGACCCCGTAACAGTCTCCACCGGAATCACCTACGACCGCCACAGCATCGAGAAATGGCTCTTCGCCTCAAACAACGCCACGTGTCCCGTCACCAAGCAGCCTCTCCTCCCAGACCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAGGCCTGGTGCACCGTCAACGCCTCCCATGGCATCCAACGAATCCCAACGCCCAAGCCCCCCGTCGACAAAACCATCATCCAAAACCTCCTCAAAGACGCTTCCGGCTCCCCGAACCTCCAGCTCCAGTGCCTCCGAACCCTCAAATCCATCGCTTCCGAGTCCCAAACCAACAAACGCTCCATCGAATCCGCAGGCGCGGTTAAATTCCTAGCTTCGGTTATAACCAACACGATAAACTCATGTCTAGACGATGACGTGGAGCTGGAGTTGAAAGCAAGCGTTGCGGATGAAGCATTGAGCTTATTACACACCATTCAGTTATCCGAAACGGGTTTGAAGACTCTGCTGAGTCACCCCGAGTTTACACACTCGTTAACCAAGGTTATGCAGAAAGGAATCTACGAGTCACGCGCTTACGCTGTTTTTCTGCTGAAGTCGTTGTCGGAAGTGGCGGATCCGGTGCAGTTAATTAACCTAAAACCGGAACTGTTCATCGAACTGGTTCAGGTCCTTAAGGATCAGATTTCGCAGAAGGCTTCCAAGGCCACGCTTCAGACACTGATTCAGGTGTGTCCGTGGGCGAGGAACAGGGTGAAAGCGGTGGAGGCCGGGGCGGTGCCGGTCATCGTGGAGCTTCTTCTGGAATGCAGGGAAAGGAAGCCCTGCGAGATGATGCTTGTGTTGTTGGAGATTCTGTGTCAGTGCGCGGACGGGCGGGCGGAGTTGCTGGCGCACGCGGCGGGGGTGGCGATCGTGGCGAAGAAGATTTTGAGGGTGTCGACGACGGCGAACGACAGGGCGGCGAAGATTCTGTTGGCCGTGTGTAGATTCTCGGCGACGCCGAGCGTGGTGCAGGAGATGGTGCAGCTGGGGGTGGTTGCGAAGCTCTGCTTGGTGCTGCAGGTGGATAGTGGGAACAAGGCGAAGGAAAAAGCCAGGGAGATTCTGAAACTGCACGCCAAAGCGTGGAAGAACTCGCCTTGCATACCTGGCCACTTGCTTGCTTCGTTTCCGATCACTTCTTGA 1236 0.5566 MDQIDVPPFFLCPISLELMKDPVTVSTGITYDRHSIEKWLFASNNATCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGIQRIPTPKPPVDKTIIQNLLKDASGSPNLQLQCLRTLKSIASESQTNKRSIESAGAVKFLASVITNTINSCLDDDVELELKASVADEALSLLHTIQLSETGLKTLLSHPEFTHSLTKVMQKGIYESRAYAVFLLKSLSEVADPVQLINLKPELFIELVQVLKDQISQKASKATLQTLIQVCPWARNRVKAVEAGAVPVIVELLLECRERKPCEMMLVLLEILCQCADGRAELLAHAAGVAIVAKKILRVSTTANDRAAKILLAVCRFSATPSVVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHAKAWKNSPCIPGHLLASFPITS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04156 411 Gene3D - 93 396 IPR011989 -
Phac7g04156 411 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Phac7g04156 411 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Phac7g04156 411 CDD RING-Ubox_PUB 7 55 IPR045210 -
Phac7g04156 411 SUPERFAMILY RING/U-box 3 80 - -
Phac7g04156 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Phac7g04156 411 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Phac7g04156 411 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Phac7g04156 411 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Phac7g04156 411 SUPERFAMILY ARM repeat 95 382 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04156 Phac-Chr7 41406625 41408352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04156 2 408 U-box Gene Family AT2G35930 56.763 3.97e-173 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04156 - - gmx:100785598 662.144