Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04152 ATGAACGACTTGATCTCCGGTTCATTCTCTCGCTTCCGCAGCGAACGGGCTTCGCCGGATCGCCACCATGTCATCGAGATGACCGGCGTCGGTGGTGACGGAGCCGGCGGCGTAAAAGTGAACCTCGACAAGTTCTTCGAGGACGTGGAGAGCGTGAAGGAGGAGCTGAAGGAGTTGGAGGGACTGGCGCAGAGTCTGAGGCGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCCAACGCCGTCAGGGACCTCCGTTCGCGTATGGACGGCGACGTTTCGGTGGCTCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCTCTCGACCGCTCCAACGCCGCCAACCGGAACCTGCCAGGCTGCGGACCCGGTTCCTCCTCGGACCGGACCCGGACCTCCGTGGTCAACGGGCTGAAGAAGAAGCTCAAGGACTCCATGGAGAGCTTCAACGAGATTCGACAGCTCGTGTCGTCGGAGTACCGGGAGACAGTGCAGCGCCGCTACTTCACCGTCACCGGCGAGAATCCCGATGATAACACGCTCGATCTTTTGATCTCCACTGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAGCAAGGCAGGGGTAGGATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAGTCTCAAGGAGTTGCATCAAGTGTTCCTTGACATGACAGTATTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCAATCGTTTGTGCACACTGGAACTGAGCAGTTGCAGACCGCACGAAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATCATACTTCTTCTGGTGATCATCTTGGTTGTGGTGCTCTCCATTGTGAGGCCATGGGAAGGTAGCAGTAATAGCGGCAATGGTGGTAACCAGTCTACACCAGCTCAAACACCACCTTCCCCTCCACCTCCTCCTGCTCAGCCTTAG 1011 0.5539 MNDLISGSFSRFRSERASPDRHHVIEMTGVGGDGAGGVKVNLDKFFEDVESVKEELKELEGLAQSLRRSHEQSKTLHNANAVRDLRSRMDGDVSVALKKAKLIKLKLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNEIRQLVSSEYRETVQRRYFTVTGENPDDNTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAQSFVHTGTEQLQTARKHQKNTRKWTCYCIILLLVIILVVVLSIVRPWEGSSNSGNGGNQSTPAQTPPSPPPPPAQP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04152 336 CDD SNARE_syntaxin1-like 211 273 - -
Phac7g04152 336 FunFam Syntaxin 132 205 305 - -
Phac7g04152 336 Pfam SNARE domain 248 300 IPR000727 -
Phac7g04152 336 SMART tSNARE_6 207 274 IPR000727 -
Phac7g04152 336 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phac7g04152 336 SUPERFAMILY t-snare proteins 41 267 IPR010989 GO:0016020|GO:0016192
Phac7g04152 336 Coils Coil 42 69 - -
Phac7g04152 336 Gene3D - 208 305 - -
Phac7g04152 336 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
Phac7g04152 336 SMART SynN_4 37 163 IPR006011 GO:0016020
Phac7g04152 336 Coils Coil 212 232 - -
Phac7g04152 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Phac7g04152 336 CDD SynN 42 199 IPR006011 GO:0016020
Phac7g04152 336 PANTHER SYNTAXIN 65 295 IPR045242 -
Phac7g04152 336 Gene3D - 40 172 - -
Phac7g04152 336 MobiDBLite consensus disorder prediction 310 336 - -
Phac7g04152 336 Pfam Syntaxin 44 247 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04152 Phac-Chr7 41352578 41356249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04152 27 330 SNARE and Associated Proteins AT3G11820 72.990 2.65e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04152 K08486 - gmx:100809258 513.457