Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04140 ATGATTTCATATCATCATCTACATCAAAGGTCACAGTTGCCATCTGCTCCAAGGAGAAGAACTTCTACTGGCCCACAATTCCTTGAGCCACACCACACCATTGTTGATGTTGGACTAGATGAAGCCACAATCATGAACTACCCCAAGATGCTGTACTCTGAAGCCAAGCAGAGGAAATCTGATTCCACTGCAACAAGCTGTTCCATATGTCTGGGAGATTACAAAAGTTCTGATGTGCTAAGGGTATTGCCAGATTGTGAACATGTGTTTCACCTGAAGTGCATAGATCCATGGTTGAGGCTGCATCCAACTTGTCCTCTCTGCAGAACATCTCCTATCCCAACACCTCTCTCAACACCTCTTGCAGAAGTTGTCCCATTAGCAACAAGGCGAGATTAA 399 0.4486 MISYHHLHQRSQLPSAPRRRTSTGPQFLEPHHTIVDVGLDEATIMNYPKMLYSEAKQRKSDSTATSCSICLGDYKSSDVLRVLPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04140 132 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 123 IPR045899 -
Phac7g04140 132 MobiDBLite consensus disorder prediction 1 26 - -
Phac7g04140 132 CDD RING-H2_EL5-like 66 109 - -
Phac7g04140 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 113 IPR013083 -
Phac7g04140 132 SMART ring_2 67 108 IPR001841 -
Phac7g04140 132 SUPERFAMILY RING/U-box 43 114 - -
Phac7g04140 132 FunFam E3 ubiquitin-protein ligase ATL6 29 114 - -
Phac7g04140 132 Pfam Ring finger domain 66 109 IPR001841 -
Phac7g04140 132 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04140 Phac-Chr7 41320211 41321489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04140 38 129 C3H Transcription Factor Family AT2G35910 72.826 8.25e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04140 - - pvu:PHAVU_007G266900g 271.166