Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04139 ATGGATTCCAAAAACATGGCAAAGAAGAACGTCAAAAAGACCAGAGGTCGTCAGAAGATTGAGATAAAAAAGATGAGCAACGAGCACAACCTTCGTGTCACATTCTCCAAGCGTCGTACTGGGATTTTCAAGAAAGCAAGTGAGCTTGCTACCCTCTGTGGTGTCGACATTTCTGTGATCATGTTTTCACCAAGACCACCTCCCCTCCTCACGCTGGACCTCAACGAGGCTCACAGCACCGTGGACGAGGGAGAGCTCCATGCTCAACTCAACAACTTGTCTGACCAGATGGCTGCAGAGAAGAAGCATGAAGAGGCTCTCAAACGTCTTATGAAAGATGTGGAGGAACACTCTTGGTGGGCCATACCGATGGAAAGCATGAATGATACGCAACTCGAGAAGTGCAAGAAGATGTTAGAGGATCTGAAGGAACGTGTGAATGAAAAACGTGAGAAACTCCTCCTTCAGAGCACTTTTTCTTATAACTCACAAACTCAGTTTTTCACAGGTGGAAACTCCTTTTCCAGTGTTAATAACACTGAGATTATACATCCACCATTGTCGTTGTAG 570 0.4544 MDSKNMAKKNVKKTRGRQKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVDISVIMFSPRPPPLLTLDLNEAHSTVDEGELHAQLNNLSDQMAAEKKHEEALKRLMKDVEEHSWWAIPMESMNDTQLEKCKKMLEDLKERVNEKREKLLLQSTFSYNSQTQFFTGGNSFSSVNNTEIIHPPLSL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04139 189 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Phac7g04139 189 CDD MADS 16 64 - -
Phac7g04139 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 64 IPR002100 GO:0003677|GO:0046983
Phac7g04139 189 ProSiteProfiles MADS-box domain profile. 15 65 IPR002100 GO:0003677|GO:0046983
Phac7g04139 189 Gene3D - 27 118 IPR036879 GO:0003677|GO:0046983
Phac7g04139 189 Coils Coil 90 110 - -
Phac7g04139 189 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Phac7g04139 189 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Phac7g04139 189 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Phac7g04139 189 PANTHER MADS BOX PROTEIN 17 149 - -
Phac7g04139 189 SUPERFAMILY SRF-like 15 67 IPR036879 GO:0003677|GO:0046983
Phac7g04139 189 Coils Coil 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04139 Phac-Chr7 41316656 41318108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04139 11 146 Type I MADS-box Gene Family AT5G60440 38.889 1.15e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac7g04139 SRF-TF 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04139 - - ccaj:109815930 206.068