Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04067 ATGAGAACTTCGTGGGCGGATTCTGCTGACAACTCAGCCATTGGTTCTGGCAATGGCAATTCCTCGGCTCTCCCTCCCCGAGGTGCATATGTGCCTCCGCATCTTCGCAACAGGTCATTGTCGTCGGAGGTTCCTGCGGTGTCACACACGCCGGCTCCTTTGCCGGTGAATGACCGGGTGAATCCTGGTGGTGCAGCTCCTCATCAGGGTGGTGGTTACTTTAAAGCTGATCAAGGGCGGCAACAAGGATATAGTTCTGGCTATCAGACTGGCGGTGGCTGGAATGGTAGAGGGGCGGGGAGGGACCGTGGGAGACGTGAGGCGAACCCTTTTGAGAATGAAGAAGTTGAGGATCAATCTTTGGGTGAGCAAGAGAACACTGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTGCCCCCGCCTGTGAATACATTTGCCGAAATAGATTTGGGTGAGGCATTGAATAATAATATACACAGATGCAAATATGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCAATTTCTCTTTCGGGGCGAGATCTGATGGCCTGTGCTCAGACCGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAGCAATATGTTCAAAGGCCACGTGTGGCTAGAACTGCTTTTCCCCTTGCACTTATCCTATCCCCCACACGGGAACTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTACCAAACAGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCTCCAATCACCCAACAGCTACGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCTACTCCAGGAAGATTGGTGGATTTGCTTGAGAGGGCTCGGGTGTCACTGCAGATGATAAAGTATTTGGCGCTTGATGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCGGGCATTAGACAGACACTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCGGATTTTCTTTCAAGTTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCATCTCATGGATCTTCTTCATGCTCAGAGGGAAAATGGAATTTGTGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGATAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTTAAGACCGGAAACACACCAATTCTTGTGGCAACGGATGTTGCAGCACGTGGTCTGGACATCCCTCGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTACGTGCACCGAATAGGAAGAACGGGGCGAGCTGGTAAAATGGGATTAGCAACGGCTTTTTTCAATGAAAGTAACTTATCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTTCCTGCCTGGCTGACCCGTTATGCTGCAAGGGCTGCTTACAGTGGTGGCAACAGAAATAGGAGGTCAGGGGGATCCCGTTTTGGTGGTCGTGATTTTAGGAGAGAGGGCTCATTTAATAAATCAACAGATTACTATGGCGGTGGAACTGGTGGTGGAGCTGCGGGGGGATATGGCAATTATGGTGGAGGATATGGTCAAGGTGTGACAAGTGCGTGGGATTAG 1830 0.4798 MRTSWADSADNSAIGSGNGNSSALPPRGAYVPPHLRNRSLSSEVPAVSHTPAPLPVNDRVNPGGAAPHQGGGYFKADQGRQQGYSSGYQTGGGWNGRGAGRDRGRREANPFENEEVEDQSLGEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNNNIHRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGIRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGICGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAARAAYSGGNRNRRSGGSRFGGRDFRREGSFNKSTDYYGGGTGGGAAGGYGNYGGGYGQGVTSAWD* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04067 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Phac7g04067 609 FunFam Probable ATP-dependent RNA helicase DDX4 113 368 - -
Phac7g04067 609 CDD SF2_C_DEAD 378 514 - -
Phac7g04067 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 544 IPR001650 -
Phac7g04067 609 Gene3D - 106 368 IPR027417 -
Phac7g04067 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 366 IPR014001 -
Phac7g04067 609 MobiDBLite consensus disorder prediction 551 570 - -
Phac7g04067 609 SMART helicmild6 424 505 IPR001650 -
Phac7g04067 609 Pfam DEAD/DEAH box helicase 175 355 IPR011545 GO:0003676|GO:0005524
Phac7g04067 609 Gene3D - 369 549 IPR027417 -
Phac7g04067 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 119 544 - -
Phac7g04067 609 SMART ultradead3 170 381 IPR014001 -
Phac7g04067 609 CDD DEADc_DDX3_DDX4 152 372 IPR044763 GO:0003724|GO:0005524
Phac7g04067 609 FunFam ATP-dependent RNA helicase RhlB 369 548 - -
Phac7g04067 609 MobiDBLite consensus disorder prediction 99 113 - -
Phac7g04067 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 520 IPR027417 -
Phac7g04067 609 MobiDBLite consensus disorder prediction 1 23 - -
Phac7g04067 609 Pfam Helicase conserved C-terminal domain 392 505 IPR001650 -
Phac7g04067 609 MobiDBLite consensus disorder prediction 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04067 Phac-Chr7 40901370 40906755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04067 149 537 Eukaryotic Initiation Factors Gene Family AT3G19760 31.282 7.59e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04067 K11594 - gmx:100818326 1007.28