Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04024 ATGTTTGTTACTGCACTGCATGAGAAAAACCTTGGAAGTGAAATGCTGATGTTGCTCCTTCTTACTATTCAGTTGGCCCCATCTTCATTTCTTTCCTATTTCATAACTCTCCAGAAAAAAAATGCTCTTGAAGCTCCTAGGGAGCCTCGGCGACCCAAAACTCACTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTCTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAACATCGGCTAAGAAAGGTTGCGCTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCTCTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACCGAGAGGTACTCAACAATGCTGGCAGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACGCAAGGATGTACATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAGTATCAATCAGATGCCGCTGACAATGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGACGATGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCATAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCAGGGGAGAAAGGGGAATCTGTGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTTAGAACAACTGGTGATGAAAATGGTGATGATCATTTATCTGTTAGCAAAATTGGTCCAAACAACTCCAGCATGGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACTGACAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTAAAAGGGGTTCCCAGTGAGACAGCCAATGAAGATTTTGCATATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGAAAAGGATGACGAAACAACCTTATCGGAGGAGGAAAAACTGGAAAGAGTTGATGCAATAGATCCCAATGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAATTGCTTGCAAGGTATAAAAGGGACCTGAGTGACAACGAAGATGGGGGATATGAATCTGACTATGCTTCTGCTTTATCCGAAGACCATTCAGATTCTCCTGTTCATGAAGATGCTGGGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTACTATACAGTCCCAGGCAGATGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGCGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTAGGTAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCGAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGGAGGATTCTCTTGACTGGTACGCCACTACAAAACGATCTCATGGAACTGTGGTCTCTCATGCATTTTTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGCGAGATGTGGAAAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGATTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCAATTGTCAGTTCTTTTGATATTTGTGGTATTGATATTCAATTAAGTTCTTCTATTTGTTCTATGCTTTTGCCTAGCCCCTTTTCAGTGGTGGACCTAAGAGGATTGGGTCTTTTATTCACTGATCTTGACTATAGCATGGCTGCTTGGGAAAGTGATGAAGTACAAGCTATTGAGACCCCTGCAACCTCAATCATGGAACGTACTGATATAGATGAGCTTGAAGTAATTAGGCCACTGAAATATCAAAACAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGTTAAACCAAGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCTATGTACTCAACAACTCTGAGGGATCTTGTTACCTTAAGACATCCTGTATATGATATTCATCAGGTGAAAGCAAACCCTACTTCGTACATGTACTCAACAAAGCTAGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTACGAGTGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGCAATGCTCTGAAGTTTTGTTACCGCTACTGTCACCAATCCGACTTGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCTGAAGGTCACCGAGCTTTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGCTATACTTACATGCGCTTAGATGGATCAACCCAACCGGAGGAGAGACAGACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCACAGAATTGGTCAGACACGGGAAGTTCATATTTATAGATTGATTAGTGACAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATTTAGTTATACAAAGTGGGGCTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAAATATTTTCGGGTCATAGAACACTTTCAATAAAAAATATGCCAAAGGATAAAAACCAGAACAATGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCATTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAGTTTACCGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCAGAATTAGGTGATTCTGTTTCGAACTTAAATAAAGAGAATGCATTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCACCAAACTCTGTTGCTGTCAAAGAAGATGATGCCGATGTTCTGGCTGATGTCAAACAGATGGCTGCAGCTGCTGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGAATTGAGGACACAGAATGGGAGTTGGATCGCATCGAAAAGTACAAGGAAGAGATGGAGGCTGAAATCGATGAAGATGAGGAACCTCTTGTTTATGAAAGCTGGGATGCTGATTTTGCAACAATGGCCTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACATCTGGCTTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGACGAGGATGTCACTGCTCTGGATTTTGTGTCTCCAAATTCAACCATGCAGAAAAAACGTAAGTCTAAAGTAAGAACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTTCAAGAGGGATCATCATGACATTTATGCGTCCGATTTAGAATCCAACGCTTTAGTTGTCCAATATGAACATTCAGAATCAAAGACTTGTGATGGTTTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGGCTCAAGAGGATGCAATACTATGTGCTGTTGTTCATGAATATGGCCCTAACTGGAGTTTGGTTAGTGATATTCTTAATAGCATGACCGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAAGAATGTCTTGTTGATGGACAATGCAAATAATGAGAAGATCATCACTCCTGGTTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTGCTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTTGACCGCAGGCAAAATCCCTCACCCACCTGTAATGGTCTCTATTTCGATCAGAGTCATTTTACTTCCATAGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGGATGCCATTTGCAAATTTGGCCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATACCACAACTGGGCAAGTGAATGACAGAGTCATCCTCTCTAACCAAGGAGACGGCATGCCAATGAGTGCAGATCAGCTGGATATAACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCTTTGTTTCCTTCTGTTATAAATTTATCGATACATGGGACTGAACCAGCAGCATCTTTAAGTAAGCAAACAGGAGAAGATGACTTTAAAGTTGGTCTGTTCATTGCTGAGAATCGTTTCAGGGAGGCAACAAGAATTTGTGAAGAAGACATCTCTGGATGGGCATCATCTGCGTTCCCAACCAGCGATGCAAGATCTCGACCTGGATCCAGGATACAATCATCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCCAAAAGAGCTTCAATTGATCCTAGCGAAATGCCTCACCATCAGGCTGACTCAATATTCCAGTCAGTGCCATCACTTAAGGATCTGAGATTTGATCTTGCTTCGTTCACTACAGATGAAGTTGGACTTAATGATGTGGATAGATGTTTCCCCTTTGACTTGAATGGGGAAAGTTCATGGGAAATGGAGGGTGTTGGAATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTTGTACTTCATTTCCTGA 6171 0.4071 MFVTALHEKNLGSEMLMLLLLTIQLAPSSFLSYFITLQKKNALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEHRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQRKDVHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALHNEMDLPIEELLKRYAGEKGESVMKESSPEHSEDVEKIVRTTGDENGDDHLSVSKIGPNNSSMVSGRRCDESNGDVATLTNNLSQCEDGQSENLKGVPSETANEDFAYDFTDEEEDGDFLLGTEEKDDETTLSEEEKLERVDAIDPNDEIALLQKESDMPVEELLARYKRDLSDNEDGGYESDYASALSEDHSDSPVHEDAGQKDSAIPMDEDIKSGEHLATIQSQADEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDIQLSSSICSMLLPSPFSVVDLRGLGLLFTDLDYSMAAWESDEVQAIETPATSIMERTDIDELEVIRPLKYQNKLQGTNIFEDIQRKIWEERLNQAKERAAAIAWWNSLRCKKRPMYSTTLRDLVTLRHPVYDIHQVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSTSETNVFLQPSYKQQCSEVLLPLLSPIRLAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISDSTIEENILKKANQKRALDNLVIQSGAYNTEFFKKLDPMEIFSGHRTLSIKNMPKDKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGDSVSNLNKENALMLNGSDHKEDRPPNSVAVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDVTALDFVSPNSTMQKKRKSKVRTDGEEKRLKKSKKFKRDHHDIYASDLESNALVVQYEHSESKTCDGLVDLEQKTAGRGKMGGKISITPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLLMDNANNEKIITPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSAWKVASHVDRRQNPSPTCNGLYFDQSHFTSIGQPSQNSLKKSSERMPFANLAQSKKLVAAALDDTTTGQVNDRVILSNQGDGMPMSADQLDITLEFPKEESDVLALFPSVINLSIHGTEPAASLSKQTGEDDFKVGLFIAENRFREATRICEEDISGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDPSEMPHHQADSIFQSVPSLKDLRFDLASFTTDEVGLNDVDRCFPFDLNGESSWEMEGVGMIPHDYVTGLISDLDDLYFIS* 2057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04024 2056 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 781 846 - -
Phac7g04024 2056 Coils Coil 1416 1436 - -
Phac7g04024 2056 Gene3D - 504 780 IPR038718 -
Phac7g04024 2056 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1079 1229 IPR001650 -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 177 196 - -
Phac7g04024 2056 PANTHER HELICASE SRCAP-RELATED 37 1958 - -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 1485 1569 - -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 307 327 - -
Phac7g04024 2056 Pfam Myb-like DNA-binding domain 1661 1715 - -
Phac7g04024 2056 FunFam Photoperiod-independent early flowering 1 505 780 - -
Phac7g04024 2056 Pfam Helicase conserved C-terminal domain 1076 1188 IPR001650 -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 210 235 - -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 1485 1500 - -
Phac7g04024 2056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 757 IPR027417 -
Phac7g04024 2056 Coils Coil 1466 1486 - -
Phac7g04024 2056 Gene3D - 1644 1718 - -
Phac7g04024 2056 CDD DEXQc_SRCAP 535 757 - -
Phac7g04024 2056 ProSiteProfiles HSA domain profile. 43 115 IPR014012 -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 427 458 - -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 1934 1984 - -
Phac7g04024 2056 Coils Coil 1292 1312 - -
Phac7g04024 2056 SMART helicmild6 1105 1188 IPR001650 -
Phac7g04024 2056 Pfam HSA domain 48 114 IPR014012 -
Phac7g04024 2056 SMART bromneu2 44 115 IPR014012 -
Phac7g04024 2056 Gene3D - 781 835 - -
Phac7g04024 2056 SMART ultradead3 531 724 IPR014001 -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 1934 1964 - -
Phac7g04024 2056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 1259 IPR027417 -
Phac7g04024 2056 Gene3D - 1051 1294 IPR027417 -
Phac7g04024 2056 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1046 1295 - -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 296 327 - -
Phac7g04024 2056 CDD SF2_C_SNF 1064 1199 - -
Phac7g04024 2056 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 547 712 IPR014001 -
Phac7g04024 2056 MobiDBLite consensus disorder prediction 1965 1979 - -
Phac7g04024 2056 Pfam SNF2-related domain 552 824 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04024 Phac-Chr7 40573149 40589877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04024 555 827 RAD5 or RAD16-like Gene Family AT5G43530 29.814 6.10e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g04024 SNF2_N 8.3e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04024 K11661 - gmx:100794898 3454.84