Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04023 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGAGCAGAGCCAAAAGGCAAAAGGCTCTTGAAGCTCCTAGGGAGCCTCGGCGACCCAAAACTCACTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTCTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAACATCGGCTAAGAAAGGTTGCGCTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCTCTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACCGAGAGGTACTCAACAATGCTGGCAGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACGCAAGGATGTACATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAGTATCAATCAGATGCCGCTGACAATGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGACGATGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCATAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCAGGGGAGAAAGGGGAATCTGTGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTTAGAACAACTGGTGATGAAAATGGTGATGATCATTTATCTGTTAGCAAAATTGGTCCAAACAACTCCAGCATGGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACTGACAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTAAAAGGGGTTCCCAGTGAGACAGCCAATGAAGATTTTGCATATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGAAAAGGATGACGAAACAACCTTATCGGAGGAGGAAAAACTGGAAAGAGTTGATGCAATAGATCCCAATGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAATTGCTTGCAAGGTATAAAAGGGACCTGAGTGACAACGAAGATGGGGGATATGAATCTGACTATGCTTCTGCTTTATCCGAAGACCATTCAGATTCTCCTGTTCATGAAGATGCTGGGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTACTATACAGTCCCAGGCAGATGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGCGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTAGGTAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCGAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGGAGGATTCTCTTGACTGGTACGCCACTACAAAACGATCTCATGGAACTGTGGTCTCTCATGCATTTTTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGCGAGATGTGGAAAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGATTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCAATTGTCAGTTCTTTTGATATTTGTGGTATTGATATTCAATTAAGTTCTTCTATTTGTTCTATGCTTTTGCCTAGCCCCTTTTCAGTGGTGGACCTAAGAGGATTGGGTCTTTTATTCACTGATCTTGACTATAGCATGGCTGCTTGGGAAAGTGATGAAGTACAAGCTATTGAGACCCCTGCAACCTCAATCATGGAACGTACTGATATAGATGAGCTTGAAGTAATTAGGCCACTGAAATATCAAAACAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGTTAAACCAAGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCTATGTACTCAACAACTCTGAGGGATCTTGTTACCTTAAGACATCCTGTATATGATATTCATCAGGTGAAAGCAAACCCTACTTCGTACATGTACTCAACAAAGCTAGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTACGAGTGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGCAATGCTCTGAAGTTTTGTTACCGCTACTGTCACCAATCCGACTTGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCTGAAGGTCACCGAGCTTTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGCTATACTTACATGCGCTTAGATGGATCAACCCAACCGGAGGAGAGACAGACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCACAGAATTGGTCAGACACGGGAAGTTCATATTTATAGATTGATTAGTGACAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATTTAGTTATACAAAGTGGGGCTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAAATATTTTCGGGTCATAGAACACTTTCAATAAAAAATATGCCAAAGGATAAAAACCAGAACAATGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCATTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAGTTTACCGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCAGAATTAGGTGATTCTGTTTCGAACTTAAATAAAGAGAATGCATTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCACCAAACTCTGTTGCTGTCAAAGAAGATGATGCCGATGTTCTGGCTGATGTCAAACAGATGGCTGCAGCTGCTGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGAATTGAGGACACAGAATGGGAGTTGGATCGCATCGAAAAGTACAAGGAAGAGATGGAGGCTGAAATCGATGAAGATGAGGAACCTCTTGTTTATGAAAGCTGGGATGCTGATTTTGCAACAATGGCCTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACATCTGGCTTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGACGAGGATGTCACTGCTCTGGATTTTGTGTCTCCAAATTCAACCATGCAGAAAAAACGTAAGTCTAAAGTAAGAACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTTCAAGAGGGATCATCATGACATTTATGCGTCCGATTTAGAATCCAACGCTTTAGTTGTCCAATATGAACATTCAGAATCAAAGACTTGTGATGGTTTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGGCTCAAGAGGATGCAATACTATGTGCTGTTGTTCATGAATATGGCCCTAACTGGAGTTTGGTTAGTGATATTCTTAATAGCATGACCGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAAGAATGTCTTGTTGATGGACAATGCAAATAATGAGAAGATCATCACTCCTGGTTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTGCTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTTGACCGCAGGCAAAATCCCTCACCCACCTGTAATGGTCTCTATTTCGATCAGAGTCATTTTACTTCCATAGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGGATGCCATTTGCAAATTTGGCCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATACCACAACTGGGCAAGTGAATGACAGAGTCATCCTCTCTAACCAAGGAGACGGCATGCCAATGAGTGCAGATCAGCTGGATATAACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCTTTGTTTCCTTCTGTTATAAATTTATCGATACATGGGACTGAACCAGCAGCATCTTTAAGTAAGCAAACAGGAGAAGATGACTTTAAAGTTGGTCTGTTCATTGCTGAGAATCGTTTCAGGGAGGCAACAAGAATTTGTGAAGAAGACATCTCTGGATGGGCATCATCTGCGTTCCCAACCAGCGATGCAAGATCTCGACCTGGATCCAGGATACAATCATCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCCAAAAGAGCTTCAATTGATCCTAGCGAAATGCCTCACCATCAGGCTGACTCAATATTCCAGTCAGTGCCATCACTTAAGGATCTGAGATTTGATCTTGCTTCGTTCACTACAGATGAAGTTGGACTTAATGATGTGGATAGATGTTTCCCCTTTGACTTGAATGGGGAAAGTTCATGGGAAATGGAGGGTGTTGGAATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTTGTACTTCATTTCCTGA 6108 0.4088 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEHRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQRKDVHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALHNEMDLPIEELLKRYAGEKGESVMKESSPEHSEDVEKIVRTTGDENGDDHLSVSKIGPNNSSMVSGRRCDESNGDVATLTNNLSQCEDGQSENLKGVPSETANEDFAYDFTDEEEDGDFLLGTEEKDDETTLSEEEKLERVDAIDPNDEIALLQKESDMPVEELLARYKRDLSDNEDGGYESDYASALSEDHSDSPVHEDAGQKDSAIPMDEDIKSGEHLATIQSQADEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDIQLSSSICSMLLPSPFSVVDLRGLGLLFTDLDYSMAAWESDEVQAIETPATSIMERTDIDELEVIRPLKYQNKLQGTNIFEDIQRKIWEERLNQAKERAAAIAWWNSLRCKKRPMYSTTLRDLVTLRHPVYDIHQVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSTSETNVFLQPSYKQQCSEVLLPLLSPIRLAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISDSTIEENILKKANQKRALDNLVIQSGAYNTEFFKKLDPMEIFSGHRTLSIKNMPKDKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGDSVSNLNKENALMLNGSDHKEDRPPNSVAVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDVTALDFVSPNSTMQKKRKSKVRTDGEEKRLKKSKKFKRDHHDIYASDLESNALVVQYEHSESKTCDGLVDLEQKTAGRGKMGGKISITPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLLMDNANNEKIITPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSAWKVASHVDRRQNPSPTCNGLYFDQSHFTSIGQPSQNSLKKSSERMPFANLAQSKKLVAAALDDTTTGQVNDRVILSNQGDGMPMSADQLDITLEFPKEESDVLALFPSVINLSIHGTEPAASLSKQTGEDDFKVGLFIAENRFREATRICEEDISGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDPSEMPHHQADSIFQSVPSLKDLRFDLASFTTDEVGLNDVDRCFPFDLNGESSWEMEGVGMIPHDYVTGLISDLDDLYFIS* 2036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04023 2035 Gene3D - 760 814 - -
Phac7g04023 2035 SMART bromneu2 23 94 IPR014012 -
Phac7g04023 2035 Coils Coil 1445 1465 - -
Phac7g04023 2035 Pfam Helicase conserved C-terminal domain 1055 1167 IPR001650 -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 156 188 - -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 1464 1548 - -
Phac7g04023 2035 SMART helicmild6 1084 1167 IPR001650 -
Phac7g04023 2035 Gene3D - 1623 1697 - -
Phac7g04023 2035 CDD SF2_C_SNF 1043 1178 - -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 1944 1958 - -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 1464 1479 - -
Phac7g04023 2035 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1058 1208 IPR001650 -
Phac7g04023 2035 CDD DEXQc_SRCAP 514 736 - -
Phac7g04023 2035 PANTHER HELICASE SRCAP-RELATED 15 1937 - -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 1 33 - -
Phac7g04023 2035 Pfam Myb-like DNA-binding domain 1640 1694 - -
Phac7g04023 2035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 736 IPR027417 -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 153 214 - -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 189 214 - -
Phac7g04023 2035 Coils Coil 1271 1291 - -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 1913 1943 - -
Phac7g04023 2035 Gene3D - 483 759 IPR038718 -
Phac7g04023 2035 SMART ultradead3 510 703 IPR014001 -
Phac7g04023 2035 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 760 825 - -
Phac7g04023 2035 Pfam HSA domain 27 93 IPR014012 -
Phac7g04023 2035 FunFam Photoperiod-independent early flowering 1 484 759 - -
Phac7g04023 2035 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 286 306 - -
Phac7g04023 2035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 1239 IPR027417 -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 406 437 - -
Phac7g04023 2035 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1025 1274 - -
Phac7g04023 2035 Pfam SNF2-related domain 531 803 IPR000330 GO:0005524|GO:0140658
Phac7g04023 2035 Coils Coil 1395 1415 - -
Phac7g04023 2035 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 691 IPR014001 -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 275 306 - -
Phac7g04023 2035 MobiDBLite consensus disorder prediction 1913 1963 - -
Phac7g04023 2035 Gene3D - 1030 1273 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04023 Phac-Chr7 40571642 40589877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04023 534 806 RAD5 or RAD16-like Gene Family AT5G43530 29.814 5.34e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g04023 SNF2_N 8.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04023 K11661 - gmx:100794898 3489.51