Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g04013 ATGAGTTCTGGTTCAGTCACCAAGGCACCACCCTCTTCCTCCTCCTCACCCAACTCTTCCACTGAGTCCCTTGATGGCTTGAAGTTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCAGCTGCAGCAACAACTCAAGGGACCAAAACAAGTGGTGGGATTTCATCTTCCTCTTCTTCAAAGAAGGGAAGGGGTGGTTCAGTTCAACCAGCTCAGCCTTCTAGATGTCAGGTTCAGGGTTGCAATGTAGATCTGAGTGGAGCTAAGGCTTACTATTCCAGGCACAAGGTTTGTGCCATGCACTCCAAGTCCCCAACTGTCATTGTGGCTAGTTTGGAACAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATATGCTTTCTGAATTTGATCAAGGAAAGCGAAGCTGCCGCCGGCGACTTGCTGGCCATAATGAGCGCCGGCGAAAGCCTCCACCCAGCTCCATATTAACCTCTCGCTATGGCAGGCTTTCTTCCTCTTTTTTTGCAGATAACAATGGCAGAGCTGGTAGCTTTCTGATGGAATTTGCTTCATATCCAAAGCTTTCATTGAGAAACACCTTGCCAAGTCCAAGATCAGACGAGCCACTACCTGGAAACCATGGTGCAGCACTAACCTGGCAGGCCAGTTCAGACACAGCATCTGAATTTTTGGTGCATGGATCAGGGAGTGGTGGAACAAGCTTCCTTGGTTCCAAACATCCTTTAGTGGAAAGCTACACCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGGACCCCACAACCTAGTGTTGAGCTCAACAACAACAACCACAACTTGTTGAATTTCAATGGGAGCTCCATGGCACAATTCACTGCTGCTTCCTCACAAGTTGCAGCCATCCATCAACTTCCAAATGCCACCTCATGGTACCTGAAGGCCGTTGACTCGCCGGAGGATGTTCCCGATCTCGGCCTTGGCCAAATTTCGCCGTCTCTTCATAGCCATCTTCATGGTGAGCTTGATGTGCCACATCAGGGTAGGCACTACATGGATCTTGAGGAATCCAGGGCCTGTGAGTCTTCTCACTGGTCACTTTAA 1104 0.4891 MSSGSVTKAPPSSSSSPNSSTESLDGLKFGQKIYFEDVSVAAAATTQGTKTSGGISSSSSSKKGRGGSVQPAQPSRCQVQGCNVDLSGAKAYYSRHKVCAMHSKSPTVIVASLEQRFCQQCSRFHMLSEFDQGKRSCRRRLAGHNERRRKPPPSSILTSRYGRLSSSFFADNNGRAGSFLMEFASYPKLSLRNTLPSPRSDEPLPGNHGAALTWQASSDTASEFLVHGSGSGGTSFLGSKHPLVESYTTDSNCALSLLSNQTWGSRTPQPSVELNNNNHNLLNFNGSSMAQFTAASSQVAAIHQLPNATSWYLKAVDSPEDVPDLGLGQISPSLHSHLHGELDVPHQGRHYMDLEESRACESSHWSL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g04013 367 MobiDBLite consensus disorder prediction 46 75 - -
Phac7g04013 367 FunFam Squamosa promoter-binding-like protein 14 68 138 - -
Phac7g04013 367 Gene3D - 67 138 IPR036893 GO:0003677|GO:0005634
Phac7g04013 367 Pfam SBP domain 77 150 IPR004333 GO:0003677
Phac7g04013 367 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Phac7g04013 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 312 IPR044817 GO:0003677
Phac7g04013 367 SUPERFAMILY SBT domain 75 156 IPR036893 GO:0003677|GO:0005634
Phac7g04013 367 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g04013 Phac-Chr7 40474338 40478954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g04013 27 367 SBP-box Gene Family AT2G42200 40.584 2.21e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac7g04013 SBP 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g04013 - - gmx:100789301 518.464