Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03997 ATGGATTCCCATACCCATCATCATCATCATCATCAGGATTACCAACTTCATCTCCATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCGAGTTCACTCCTTTCAAATCTCACGCCTTTCGTCAGCTTCGGTGGTGACACTGCTGCTTCAAGTAGCTTCCAGGAGTTGGAAGAAAAGAACAACCACAACTGTTGTTCTGAGGATTTGAGTTCGATGAATTCGCATAAGGGTTATGGTGGGGGGTTGCCACCTCACTATCCAAGACATGGTTCTTCTTCTGCTACTTCGAGTTCTTCCATGGAGGGGTCTTATGGGTTGGTGGCTTCAATGGGAATGGATCATGAAGCTCCAAATAAGGGGTTTGGGTCAGGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAACGTTTCCTTCCAAAATGGGTTTGTCACCATGAAAGGTGTAGGAAACTATGGTGGGGTGAATGACAATAATGGTGAACTTAGTCCATGTATTAGTAGGTTGAAGAATCATATTAGCTTCTCACCAAGAAATTCTTCTTCCCTGGGAATGTTGTCTCAGATCTCTGAAATAGGGAGTGAAGACATTGAGGCAACTAGTCCTGATGATGATGCCAGTCATGGAGGTAATGATACTCAACATTTTGGCACTGGATTCCCTTATGGTTCTTGGAGTGAGACTCCACAACTCTGTGAAAATCTGAGTGGCTTGAAAAGAGGGAGAAGTGACAATGAAAAGATCTTTTCTGAAGTTCAGAATGGAGAGCCAGGAACTCAAGTCAATGTATTATCACATCATTTGAGTTTGCCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAACCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTTAAGACTCTTTGTGATAAACGAGCAAACTGCAAGTGTTCAAGCATGCAAAAGGCAGATTCATGA 1149 0.4369 MDSHTHHHHHHQDYQLHLHQNQPSSGLLRFRSAPSSLLSNLTPFVSFGGDTAASSSFQELEEKNNHNCCSEDLSSMNSHKGYGGGLPPHYPRHGSSSATSSSSMEGSYGLVASMGMDHEAPNKGFGSGLLRQSSSPAGLFSNNNVSFQNGFVTMKGVGNYGGVNDNNGELSPCISRLKNHISFSPRNSSSLGMLSQISEIGSEDIEATSPDDDASHGGNDTQHFGTGFPYGSWSETPQLCENLSGLKRGRSDNEKIFSEVQNGEPGTQVNVLSHHLSLPKTSAEMITMEKLLQFPDSVPCKTRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLCDKRANCKCSSMQKADS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03997 382 SMART finulus 314 364 IPR011598 GO:0046983
Phac7g03997 382 MobiDBLite consensus disorder prediction 79 104 - -
Phac7g03997 382 Gene3D - 309 380 IPR036638 GO:0046983
Phac7g03997 382 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 378 - -
Phac7g03997 382 CDD bHLH_AtbHLH_like 313 365 IPR045239 -
Phac7g03997 382 MobiDBLite consensus disorder prediction 205 226 - -
Phac7g03997 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 358 IPR011598 GO:0046983
Phac7g03997 382 Pfam Helix-loop-helix DNA-binding domain 313 359 IPR011598 GO:0046983
Phac7g03997 382 FunFam Transcription factor bHLH130 family 309 378 - -
Phac7g03997 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 372 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03997 Phac-Chr7 40347530 40351042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03997 17 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.453 3.08e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac7g03997 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03997 - - gmx:100819605 605.905