Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03987 ATGGAGCAAACCACGCTTGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCATCATAGCTCCGGCGCCGGAAACCGCAAGTTCCTTCACCGCACTGCTGGAGCTCCCGCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCGGAGCGAGCCGGGAAACCACCGCGCCATAATCCGAAACCCTACCCGTTGACCTCATTTGCCTCCGCCTCCGCCGCCAACCTGACCTTCCCGTCAAACGCCGCGCTGATCGAGCGCGCCGCCAGGTTCTCCATCTTCGCCGGAGAGAATTCTAACTCGAACTCGAACTCGCCGGAGGTTAAGCGAGAGCTGCCGGAGACCGATTCCAACCCGAGTTCGACTCAGGGCGGCGGCTCCGCCTCCGATCCCACCCTGGAGAACAAGGATGAGAAGGGCCTGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAGGCGTCGTCGAAGAAGAGCAAGAGCGTAGTCGCTGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTATGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTGGATAAAATCATCAACCATGTTCAATCTCTACAGCATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTAAACCCAGTAATTGAGTTCAACCTTGACAGCTTATTGGCTACCGAAGGAGTGTCTCCAATGGACTGTAACTTCCCTCCCACAGTTGCACCCGCCGTCTGGCCAGAAATCCCGCAGAATGCAAACAGACAACAATATCAGCAACCGTGGCAGTTCGATGCATTCCACCACCAGGCCATTTGGGGCAGGGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 1029 0.5364 MEQTTLEAIQFNEEIQGIIAPAPETASSFTALLELPPTQAVELLHSPERAGKPPRHNPKPYPLTSFASASAANLTFPSNAALIERAARFSIFAGENSNSNSNSPEVKRELPETDSNPSSTQGGGSASDPTLENKDEKGLKRKEREKKVKASSKKSKSVVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIEFNLDSLLATEGVSPMDCNFPPTVAPAVWPEIPQNANRQQYQQPWQFDAFHHQAIWGREEDNTNFMTPENSLLSYDSSANSVSLHSNQLKMEL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03987 342 MobiDBLite consensus disorder prediction 94 166 - -
Phac7g03987 342 Gene3D - 178 250 IPR036638 GO:0046983
Phac7g03987 342 SMART finulus 187 237 IPR011598 GO:0046983
Phac7g03987 342 MobiDBLite consensus disorder prediction 130 166 - -
Phac7g03987 342 Pfam Helix-loop-helix DNA-binding domain 185 232 IPR011598 GO:0046983
Phac7g03987 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 231 IPR011598 GO:0046983
Phac7g03987 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 90 326 IPR024097 GO:0006355
Phac7g03987 342 FunFam transcription factor bHLH48-like isoform X1 178 250 - -
Phac7g03987 342 MobiDBLite consensus disorder prediction 113 128 - -
Phac7g03987 342 CDD bHLH_AtBPE_like 171 256 - -
Phac7g03987 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 249 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03987 Phac-Chr7 40303733 40311630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03987 2 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.072 4.45e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac7g03987 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03987 - - gmx:100799133 539.65