Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03916 ATGGGGAGGGGGAAGATTGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGGAATGGTTTGCTGAAGAAGGCCAGAGAATTGTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAACATTCCATTTCAAGGTATAGCAAAGGGACAGAATTGGATTCTGCAGAGCAACCTATTGATGTGCCCCCAAAAGATGTTTTGGTTATGGAGCCTGATACTAACCTTTTGAAGGACGAAATAACAAAGCTTCGATCGGCATACTTAAATATGATGGGTAAGGAGCTTGATGGGTTGAGCCTTAAGGAATTGCAGCACCTAGAAAATCAACTGAGTGAAGGGATACTAGCTGTCAAAGAAAAAAAGGAACAAGTACTTGTAGAACAGCTTAGGAGGTCCAGGATACAGGAGCAGAAAGCTGTGCTGGAAAATGAAGTTCTGCGCAAACAGCTTGAGGAGATACAAAATAAAACAAAGACACAGTTCCTTGAATTCAGTTCTTTGGATAGGAGTTTTTCCAAGAACAGTTCAAAATCTCTTTTCAATTGTGCTTCAGAGGAAAATGATCATTCAGATACTTCTTTGCAGTTAGCGTTGTCAACAGATTATGGTCGGCAGAGGAAAGGATTGAAAATAGAAGCTTGCAATGACTCAGGGAGTCAAGTGGCTTCACAGTGA 744 0.4086 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHSISRYSKGTELDSAEQPIDVPPKDVLVMEPDTNLLKDEITKLRSAYLNMMGKELDGLSLKELQHLENQLSEGILAVKEKKEQVLVEQLRRSRIQEQKAVLENEVLRKQLEEIQNKTKTQFLEFSSLDRSFSKNSSKSLFNCASEENDHSDTSLQLALSTDYGRQRKGLKIEACNDSGSQVASQ* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03916 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phac7g03916 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac7g03916 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac7g03916 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac7g03916 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g03916 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac7g03916 247 Pfam K-box region 95 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g03916 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac7g03916 247 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Phac7g03916 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Phac7g03916 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac7g03916 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Phac7g03916 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac7g03916 247 Coils Coil 126 146 - -
Phac7g03916 247 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Phac7g03916 247 Coils Coil 154 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03916 Phac-Chr7 39813647 39818178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03916 1 221 MADS-box Gene Family AT5G13790 48.661 6.61e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac7g03916 K-box 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03916 - - gmx:100792278 415.616