Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03831 ATGGCACAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTTGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCGCGGACAAATGAGAAACATTCAGAGACCGCCGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTCGGAGGCCCTGTAAATACTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAGATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACTGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAATGCAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACAACAGCAACAACAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCACAACGATTAAGGGGATTAACTAGGGGAAGTTTGAATCCTAAAGATGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCATCAAAGATCAACATGCCGCAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCAACTCATACACCCGGTGACGGAGTTGCAATGGCGGGTAGCTTGCAAAACGTTGCAGGTGTATCCAAAGGATTGATGATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGGACGTTGAAACGGAACCCTTCAGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGCCATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACTCCGGAGGAACACAATCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCCGATCCAACCTTTTGTTTGCAGGCATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAACGAGATTCGTTTCTGGAATATTAGCCAATATTCTTGCACCCGACTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAATTTCTGGCTGCAGCAAGTGGTAGTGTTGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACACATTTCAGGGACACTCTGCAGAGGTACATTGCGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTTAGTCAAGAATCTGTCAAAGTGTGGTCGCTTGCATCTGGGGACTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTTTTTCACCCAAGCTACTCAACTCTGTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTTCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTAACAGGAATGGTTGCTTCTGCCAGTCATGACAAATCTGTGAAGATTTGGAAATAA 2361 0.4367 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQMQQLQLIRQAQLQRRDSNHPPLGGPVNTITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANAGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLTRGSLNPKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLMQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGSLQNVAGVSKGLMMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFCLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRLFKGGSTQVRFQPRVGQFLAAASGSVVSLFDVETDRQMHTFQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTISAHECVISALAQSPVTGMVASASHDKSVKIWK* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03831 786 Gene3D - 639 786 IPR015943 GO:0005515
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
Phac7g03831 786 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 786 IPR044716 GO:0003714
Phac7g03831 786 CDD WD40 501 786 - -
Phac7g03831 786 Gene3D - 483 638 IPR015943 GO:0005515
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 712 IPR001680 GO:0005515
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 590 625 - -
Phac7g03831 786 SMART Lish 8 40 IPR006594 GO:0005515
Phac7g03831 786 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Phac7g03831 786 MobiDBLite consensus disorder prediction 301 414 - -
Phac7g03831 786 PRINTS G protein beta WD-40 repeat signature 566 580 IPR020472 -
Phac7g03831 786 PRINTS G protein beta WD-40 repeat signature 773 786 IPR020472 -
Phac7g03831 786 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 754 786 - -
Phac7g03831 786 Pfam WD domain, G-beta repeat 753 786 IPR001680 GO:0005515
Phac7g03831 786 Pfam WD domain, G-beta repeat 546 579 IPR001680 GO:0005515
Phac7g03831 786 Pfam WD domain, G-beta repeat 510 537 IPR001680 GO:0005515
Phac7g03831 786 Pfam WD domain, G-beta repeat 586 623 IPR001680 GO:0005515
Phac7g03831 786 Pfam WD domain, G-beta repeat 668 703 IPR001680 GO:0005515
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Phac7g03831 786 Coils Coil 78 98 - -
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 632 IPR001680 GO:0005515
Phac7g03831 786 SUPERFAMILY WD40 repeat-like 499 786 IPR036322 GO:0005515
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 540 - -
Phac7g03831 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 786 IPR001680 GO:0005515
Phac7g03831 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Phac7g03831 786 Pfam LisH 10 36 IPR006594 GO:0005515
Phac7g03831 786 MobiDBLite consensus disorder prediction 321 408 - -
Phac7g03831 786 SMART WD40_4 498 537 IPR001680 GO:0005515
Phac7g03831 786 SMART WD40_4 540 579 IPR001680 GO:0005515
Phac7g03831 786 SMART WD40_4 665 703 IPR001680 GO:0005515
Phac7g03831 786 SMART WD40_4 626 662 IPR001680 GO:0005515
Phac7g03831 786 SMART WD40_4 706 745 IPR001680 GO:0005515
Phac7g03831 786 SMART WD40_4 747 786 IPR001680 GO:0005515
Phac7g03831 786 SMART WD40_4 583 623 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03831 Phac-Chr7 39207586 39225146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03831 499 748 U-box Gene Family AT2G33340 27.715 2.16e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phac7g03831 WD40 0.00041 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03831 - - var:108326218 1464.13