LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac7g03830	ATGGCACAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTTGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCGCGGACAAATGAGAAACATTCAGAGACCGCCGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTCGGAGGCCCTGTAAATACTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAGATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACTGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAATGCAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACAACAGCAACAACAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCACAACGATTAAGGGGATTAACTAGGGGAAGTTTGAATCCTAAAGATGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCATCAAAGATCAACATGCCGCAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCAACTCATACACCCGGTGACGGAGTTGCAATGGCGGGTAGCTTGCAAAACGTTGCAGGTGTATCCAAAGGATTGATGATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCTTCCACAAATCAACTGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGGACGTTGAAACGGAACCCTTCAGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGCCATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACTCCGGAGGAACACAATCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCCGATCCAACCTTTTGTTTGCAGGCATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAACGAGATTCGTTTCTGGAATATTAGCCAATATTCTTGCACCCGACTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAATTTCTGGCTGCAGCAAGTGGTAGTGTTGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACACATTTCAGGGACACTCTGCAGAGGTACATTGCGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTTAGTCAAGAATCTGTCAAAGTGTGGTCGCTTGCATCTGGGGACTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTTTTTCACCCAAGCTACTCAACTCTGTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTTCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTAACAGGAATGGTTGCTTCTGCCAGTCATGACAAATCTGTGAAGATTTGGAAATAA	2355	0.4365	MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQMQQLQLIRQAQLQRRDSNHPPLGGPVNTITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANAGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLTRGSLNPKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLMQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGSLQNVAGVSKGLMMYGTDGAGGLASSTNQLDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFCLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRLFKGGSTQVRFQPRVGQFLAAASGSVVSLFDVETDRQMHTFQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTISAHECVISALAQSPVTGMVASASHDKSVKIWK*	785

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac7g03830	784	ProSiteProfiles	Trp-Asp (WD) repeats profile.	752	784	IPR001680	GO:0005515
	Phac7g03830	784	Gene3D	-	481	636	IPR015943	GO:0005515
	Phac7g03830	784	SMART	Lish	8	40	IPR006594	GO:0005515
	Phac7g03830	784	MobiDBLite	consensus disorder prediction	301	414	-	-
	Phac7g03830	784	ProSiteProfiles	Trp-Asp (WD) repeats profile.	503	544	IPR001680	GO:0005515
	Phac7g03830	784	PRINTS	G protein beta WD-40 repeat signature	522	536	IPR020472	-
	Phac7g03830	784	PRINTS	G protein beta WD-40 repeat signature	564	578	IPR020472	-
	Phac7g03830	784	PRINTS	G protein beta WD-40 repeat signature	771	784	IPR020472	-
	Phac7g03830	784	Gene3D	-	637	784	IPR015943	GO:0005515
	Phac7g03830	784	Pfam	WD domain, G-beta repeat	584	621	IPR001680	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac7g03830	Phac-Chr7	39207586	39225146	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac7g03830	497	746	U-box Gene Family	AT2G33340	27.715	2.24e-17	84.0

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	LUG	Phac7g03830		WD40	0.00041	CL0186

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac7g03830	-		-	var:108326218	1455.65

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