Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03725 ATGTTGAGAATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGACATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCGAGGAGTTCAGGATGAGGAGAGATGGGATTGCAGAGAGGTTGTTTTCTTGCAGACTGAGTCGATGTTTGGGGTGTGAGCGGGTGGAATTGGCAGTGTCAGTGGATGATGATGGCGGTGAAGGTGGTGGTGGTTGTAAGAGTGGCGTTGATGGGGCTGGTGCTGAGTTTGAGTCTGAAGCAGGCGCAAGTAAAGAGAGCAAGGTCAATAGTGCCAGAGATGATGATCCTGGCGAGATGAACACGAACCGAGTGAGCAATTACAGCTATGGAGAAGCTGAGGCGTTGACCGATGAGATTGAAGAAGAGTCACAATATGTTGAAGAGGTATTCAGGATCAAGGATGTTTTGCTTAACTGTGAAGAAGCGTCTGATTCGGTTTTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACAGTGGATCTTTTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGGAAGCATGGATCAAGTGACATTTGTCGACTAGCACGGACTCTTATCGATGGCTGGAAGGAAATGGTGGATGCGTGGGTCAAAGCTACCACAGCTTTTGCAGGTTCAGAAGGTACTCCAGATTCAGTAAATCCATCTGTTGTTGAGGATGAGGATGAAGAAGGCCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCCGCTCCAACTGGTTCTATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATGATGGAAATCCTAGACACAGTGGGGAATTCATCAGAAACCGTGATCATGGAAGAAGTCCAATTCTGAACAGTAAAAATACAGCAAAGAGGAAACCCCAGGCATCAAATGAGGCAAACATTATTGCCAAGGACAGTAAGGGTCAGCAAGCAAGGAAAAATGAGGCTGCTGTGAGGCCAAATCAACCAGTTATCGGTGATTCTGGTCCTGGCAGACCACCAAAATCAACCATGCAGAAGAAAGGCCATATTGAGCCGCAGGTGCAACAAAATACAGTGAAGAGTACTATCCCAAAAAATCCTTATGTTCGTCAGCTAGATAAACCCAGGTCTTCGGATGATGCTTCAGTCCAAGTGAAGTTAGAAGCCAGTAAGAGGAAACTTCAGGAGCGGTATCAACAAGTTGAAAATGTTATCTCCACATAA 1263 0.4608 MLRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPEEFRMRRDGIAERLFSCRLSRCLGCERVELAVSVDDDGGEGGGGCKSGVDGAGAEFESEAGASKESKVNSARDDDPGEMNTNRVSNYSYGEAEALTDEIEEESQYVEEVFRIKDVLLNCEEASDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSSDICRLARTLIDGWKEMVDAWVKATTAFAGSEGTPDSVNPSVVEDEDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPRHSGEFIRNRDHGRSPILNSKNTAKRKPQASNEANIIAKDSKGQQARKNEAAVRPNQPVIGDSGPGRPPKSTMQKKGHIEPQVQQNTVKSTIPKNPYVRQLDKPRSSDDASVQVKLEASKRKLQERYQQVENVIST* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03725 420 Pfam TFIIS helical bundle-like domain 170 218 IPR017923 -
Phac7g03725 420 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 417 IPR044805 -
Phac7g03725 420 MobiDBLite consensus disorder prediction 361 378 - -
Phac7g03725 420 MobiDBLite consensus disorder prediction 229 255 - -
Phac7g03725 420 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 143 231 IPR035441 -
Phac7g03725 420 MobiDBLite consensus disorder prediction 279 299 - -
Phac7g03725 420 MobiDBLite consensus disorder prediction 97 125 - -
Phac7g03725 420 MobiDBLite consensus disorder prediction 300 323 - -
Phac7g03725 420 MobiDBLite consensus disorder prediction 99 118 - -
Phac7g03725 420 CDD TFIIS_I 146 219 - -
Phac7g03725 420 MobiDBLite consensus disorder prediction 272 397 - -
Phac7g03725 420 SMART TFS2_5 148 220 IPR003617 GO:0005634
Phac7g03725 420 ProSiteProfiles TFIIS N-terminal domain profile. 146 221 IPR017923 -
Phac7g03725 420 Coils Coil 397 420 - -
Phac7g03725 420 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 229 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03725 Phac-Chr7 38702930 38710785 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phac7g03725 Med26 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03725 - - gmx:100775579 684.871