Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03685 ATGCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAGCAATAGCATTTCTCGCTGCTGTCTTTGGTAAAGGACAGTCTACTCTAAATGAAAACCAGATACAGAAAAGAGACCCTGCATTAATAATATGCCCAACATCAGTTATCCACAACTGGGATAGCGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAATCGGGATCTGATATTTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATAACCAGTTTTGACACATACAGGATTCATGGAAGTTCTTTGTCAGATGTCAAATGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTGTAATGCAAAATAAGATAATGGAACTGTTCAATCTCTTTGACTGGGTTTCACCAGGATCCCTTGGAACGCGGGAACACTTTCGTGACTTCTATGATGAACCCCTCAAGCATGGGCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTCGTAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATCTGCAAAAACGTATTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGACGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTTATCAAACCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCCGCTGCTGTCTTTGGCACTGATATTGATTTAGTGGGTGGGAAAACACAAAATGAAAGTTTCATGGGTTTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAGAAGCTATTGTTCTCATGGAATTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGTGA 1182 0.4044 MLGDDMGLGKTIQAIAFLAAVFGKGQSTLNENQIQKRDPALIICPTSVIHNWDSEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSSLSDVKWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLFDWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGTDIDLVGGKTQNESFMGLSDVKHCGKMRALEKLLFSWNSQGDKVLLFSYSVR* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03685 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 211 IPR027417 -
Phac7g03685 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 392 IPR027417 -
Phac7g03685 393 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 161 IPR014001 -
Phac7g03685 393 Gene3D - 223 393 IPR027417 -
Phac7g03685 393 SMART ultradead3 2 169 IPR014001 -
Phac7g03685 393 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 1 210 - -
Phac7g03685 393 Gene3D - 1 210 IPR038718 -
Phac7g03685 393 PANTHER SNF2/RAD54 FAMILY MEMBER 2 392 - -
Phac7g03685 393 Pfam SNF2-related domain 1 252 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03685 Phac-Chr7 38381926 38388661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03685 1 214 RAD5 or RAD16-like Gene Family AT3G16600 30.328 2.54e-22 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g03685 SNF2_N 3.5e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03685 K20098 - gmx:100781003 758.059