Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03684 ATGTCACTGGAGGCTCTGAAGGAAACTCTGCGACCTTGTTCAACCCAAGAGCCTTCTTCCTCTTCTGCAATTACCCAAACACAGCGCAATTCAATTCTTAGCCACTACGATTCCCTCTTCCCAATCCACAGAAAACCCCCAAAATCCTCTCTTTCCGACCAGCTTCGCCGCCTTAACGACTCACTATCTCCATCACACTCCAAAACCCTACAGCAAGAAAAAGAAAAACAGGAACTACTGCAAGAAGAAGAACCTGAGATAGAGAGAGCGAAATTCGCTTCAGTTAAATTGCCACAATTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCTTTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGTTTGTACAAGAACCATCATGGAGGCATGCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAGCAATAGCATTTCTCGCTGCTGTCTTTGGTAAAGGACAGTCTACTCTAAATGAAAACCAGATACAGAAAAGAGACCCTGCATTAATAATATGCCCAACATCAGTTATCCACAACTGGGATAGCGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAATCGGGATCTGATATTTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATAACCAGTTTTGACACATACAGGATTCATGGAAGTTCTTTGTCAGATGTCAAATGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTGTAATGCAAAATAAGATAATGGAACTGTTCAATCTCTTTGACTGGGTTTCACCAGGATCCCTTGGAACGCGGGAACACTTTCGTGACTTCTATGATGAACCCCTCAAGCATGGGCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTCGTAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATCTGCAAAAACGTATTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGACGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGGTGAATTCAGATGCTTTTGTCTCTATTTTTTATTATACCGTCCTTGCAAAATATATTGATAAGAACTTTGTTCATAGCTGTGGACATCTGTTGCAACTTTGTTCATTTGTAGGAGATTTTGCTTTGTAA 1518 0.413 MSLEALKETLRPCSTQEPSSSSAITQTQRNSILSHYDSLFPIHRKPPKSSLSDQLRRLNDSLSPSHSKTLQQEKEKQELLQEEEPEIERAKFASVKLPQFQFDHTGPFEPLLLSSHGEFPLVQVPASINCRLLEHQREGVRFLYGLYKNHHGGMLGDDMGLGKTIQAIAFLAAVFGKGQSTLNENQIQKRDPALIICPTSVIHNWDSEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSSLSDVKWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLFDWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQVNSDAFVSIFYYTVLAKYIDKNFVHSCGHLLQLCSFVGDFAL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03684 505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 314 IPR014001 -
Phac7g03684 505 MobiDBLite consensus disorder prediction 69 83 - -
Phac7g03684 505 MobiDBLite consensus disorder prediction 1 29 - -
Phac7g03684 505 Pfam SNF2-related domain 148 403 IPR000330 GO:0005524|GO:0140658
Phac7g03684 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 364 IPR027417 -
Phac7g03684 505 PANTHER SNF2/RAD54 FAMILY MEMBER 34 463 - -
Phac7g03684 505 MobiDBLite consensus disorder prediction 12 29 - -
Phac7g03684 505 Gene3D - 113 363 IPR038718 -
Phac7g03684 505 Coils Coil 70 90 - -
Phac7g03684 505 MobiDBLite consensus disorder prediction 52 68 - -
Phac7g03684 505 MobiDBLite consensus disorder prediction 43 83 - -
Phac7g03684 505 SMART ultradead3 128 322 IPR014001 -
Phac7g03684 505 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 114 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03684 Phac-Chr7 38381926 38388661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03684 125 367 RAD5 or RAD16-like Gene Family AT3G16600 29.496 1.99e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g03684 SNF2_N 3.5e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03684 K20098 - gmx:100781003 824.698