Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03683 ATGTCACTGGAGGCTCTGAAGGAAACTCTGCGACCTTGTTCAACCCAAGAGCCTTCTTCCTCTTCTGCAATTACCCAAACACAGCGCAATTCAATTCTTAGCCACTACGATTCCCTCTTCCCAATCCACAGAAAACCCCCAAAATCCTCTCTTTCCGACCAGCTTCGCCGCCTTAACGACTCACTATCTCCATCACACTCCAAAACCCTACAGCAAGAAAAAGAAAAACAGGAACTACTGCAAGAAGAAGAACCTGAGATAGAGAGAGCGAAATTCGCTTCAGTTAAATTGCCACAATTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCTTTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGTTTGTACAAGAACCATCATGGAGGCATGCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAGCAATAGCATTTCTCGCTGCTGTCTTTGGTAAAGGACAGTCTACTCTAAATGAAAACCAGATACAGAAAAGAGACCCTGCATTAATAATATGCCCAACATCAGTTATCCACAACTGGGATAGCGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAATCGGGATCTGATATTTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATAACCAGTTTTGACACATACAGGATTCATGGAAGTTCTTTGTCAGATGTCAAATGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTGTAATGCAAAATAAGATAATGGAACTGTTCAATCTCTTTGACTGGGTTTCACCAGGATCCCTTGGAACGCGGGAACACTTTCGTGACTTCTATGATGAACCCCTCAAGCATGGGCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTCGTAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATCTGCAAAAACGTATTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGACGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTTATCAAACCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCCGCTGCTGTCTTTGGCACTGATATTGATTTAGTGGGTGGGAAAACACAAAATGAAAGTTTCATGGGTTTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAGAAGCTATTGTTCTCATGGAATTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATTCGAAAAGGCTACAGCTTCTCAAGACTTGATGGGTCCACTCCTACTAATTTACGCCAATCTCTGGTTGATGATTTCAACTCTAGTTCAAGCAAACAGGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTTAGTGCAAACCGTGTTGTAATATTTGACCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCACGTCAGGTGTATAAGCAGCAGCTATCGAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAAGCTGTTTACCAGTGAGATCGTTGAATTGCATAAAGAACATGGACATGAAACGGGACAACTGGAAAAAGTAAATCTGTCCGAACAAACAGATTCATCGGTATCAGAGTCAGAAACCAGATCATCTTATAAATCGGCAGGGACTGCAACAAGTAAACCAGATCTTGAAGACCTTGGCATTGTATATACTCATCGCAATGAAGACATTGTCAACGTTGGAGCAGTAATTCAAGGGAAAATAAATGCCAACATCCCATCAAATGATAGCTTAGTCAAGCCAGGCATTTCTTCGGATCATCAAAGAAAAAAACCAGAAAAAAGTAAAGTTCCTTTGATTGATGATATGAAGAAAACCCAATATAAGCTCCTTGCTCAGTCTATGGGCATGGAAGAGCTTGCTTTTAGCAAATGGTTACTATCAGCGACTCCACTGGAGAGAAAAAAAGTGCTTCTTGACTACAAGAAGAAAAAGAAGATGCCTAATGGTTGA 2592 0.4151 MSLEALKETLRPCSTQEPSSSSAITQTQRNSILSHYDSLFPIHRKPPKSSLSDQLRRLNDSLSPSHSKTLQQEKEKQELLQEEEPEIERAKFASVKLPQFQFDHTGPFEPLLLSSHGEFPLVQVPASINCRLLEHQREGVRFLYGLYKNHHGGMLGDDMGLGKTIQAIAFLAAVFGKGQSTLNENQIQKRDPALIICPTSVIHNWDSEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSSLSDVKWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLFDWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGTDIDLVGGKTQNESFMGLSDVKHCGKMRALEKLLFSWNSQGDKVLLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPTNLRQSLVDDFNSSSSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIVELHKEHGHETGQLEKVNLSEQTDSSVSESETRSSYKSAGTATSKPDLEDLGIVYTHRNEDIVNVGAVIQGKINANIPSNDSLVKPGISSDHQRKKPEKSKVPLIDDMKKTQYKLLAQSMGMEELAFSKWLLSATPLERKKVLLDYKKKKKMPNG* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03683 863 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 314 IPR014001 -
Phac7g03683 863 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 523 676 IPR001650 -
Phac7g03683 863 Pfam Helicase conserved C-terminal domain 520 632 IPR001650 -
Phac7g03683 863 MobiDBLite consensus disorder prediction 69 83 - -
Phac7g03683 863 Gene3D - 376 741 IPR027417 -
Phac7g03683 863 MobiDBLite consensus disorder prediction 1 29 - -
Phac7g03683 863 MobiDBLite consensus disorder prediction 723 750 - -
Phac7g03683 863 Pfam SNF2-related domain 148 404 IPR000330 GO:0005524|GO:0140658
Phac7g03683 863 SMART helicmild6 549 632 IPR001650 -
Phac7g03683 863 MobiDBLite consensus disorder prediction 12 29 - -
Phac7g03683 863 MobiDBLite consensus disorder prediction 715 751 - -
Phac7g03683 863 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 114 363 - -
Phac7g03683 863 Coils Coil 70 90 - -
Phac7g03683 863 CDD SF2_C_SNF 514 643 - -
Phac7g03683 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 364 IPR027417 -
Phac7g03683 863 MobiDBLite consensus disorder prediction 52 68 - -
Phac7g03683 863 MobiDBLite consensus disorder prediction 43 83 - -
Phac7g03683 863 Gene3D - 113 363 IPR038718 -
Phac7g03683 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 686 IPR027417 -
Phac7g03683 863 PANTHER SNF2/RAD54 FAMILY MEMBER 35 798 - -
Phac7g03683 863 SMART ultradead3 128 322 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03683 Phac-Chr7 38381926 38388661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03683 152 662 RAD5 or RAD16-like Gene Family AT1G02670 26.250 1.99e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g03683 SNF2_N 8e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03683 K20098 - gmx:100781003 1495.33