Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03616 ATGGCTGCTACTGCTGCAGGCATAGCTTCATTGTTTTCTTCTTCCATTAACAGCGTCAAATGTCTTCGTTCCAAGCACTGCTCCATGATGGATCCCCTTATGACAGCAATGCTGTCAAACCGCATCTTTGCACCTGTGTCACACTTGGTGGTGGAACCTTTGTCCATCGGAGGTACCACATCGCATAGGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTGGTTGTTGTGGATGATACTGGTTTGGTTGAAGAAGAAAAAGTGGAGGAGAATGAAGGGGAGGAAGTGGTGGCAGAACCAGACTCAGATGAATCCTTTGCTAGCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGACTATGGTAGTGCAGAACTAATTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGACTGTAATGCAGTAATAGAAAATCTTGACGGAAAAGAATACCTGGGCAGAACCTTGAGGGTGAACTTCTCTAACAAACCAAAAGCAAAAGAACCCTTGTACCCTGAAACTGAACATAAGCTCTTTGTTGGGAATCTGTCATGGTCAGTAACTAATGAGATTTTGACACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCCTATATGATGGAGAAACTGGAAGGTCACGTGGCTATGGCTTTGTTTGCTTTTCAACAAAAGAAGAGATGGAAGCTGCCCTTGGAGCCTTGAATGATGTGGAACTAGAAGGACGAGCTATGCGTGTGAGTTTGGCTGAAGGAAAACGTGCACAAGGCTAA 864 0.4456 MAATAAGIASLFSSSINSVKCLRSKHCSMMDPLMTAMLSNRIFAPVSHLVVEPLSIGGTTSHRLWGPRISAAVAQEEVVVVDDTGLVEEEKVEENEGEEVVAEPDSDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEYLGRTLRVNFSNKPKAKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVELEGRAMRVSLAEGKRAQG* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03616 287 SMART rrm1_1 205 278 IPR000504 GO:0003723
Phac7g03616 287 SMART rrm1_1 114 187 IPR000504 GO:0003723
Phac7g03616 287 FunFam 28 kDa ribonucleoprotein, chloroplastic 195 286 - -
Phac7g03616 287 Gene3D - 195 287 IPR012677 -
Phac7g03616 287 CDD RRM2_NsCP33_like 205 280 - -
Phac7g03616 287 SUPERFAMILY RNA-binding domain, RBD 107 194 IPR035979 GO:0003676
Phac7g03616 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 185 IPR000504 GO:0003723
Phac7g03616 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 275 IPR000504 GO:0003723
Phac7g03616 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Phac7g03616 287 PANTHER OS02G0815200 PROTEIN 64 284 - -
Phac7g03616 287 SUPERFAMILY RNA-binding domain, RBD 198 284 IPR035979 GO:0003676
Phac7g03616 287 Gene3D - 74 194 IPR012677 -
Phac7g03616 287 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 194 - -
Phac7g03616 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03616 Phac-Chr7 37833032 37836089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03616 112 283 Eukaryotic Initiation Factors Gene Family AT3G16380 33.508 1.19e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03616 - - gmx:100820203 440.654