Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03548 ATGGCCGTTCCCGCGACGGTTGCCGCCGCGCCGGCTTCGCTTTACGTTGGAGATCTTCACCCTGACATTTCCGACTCCCAACTTTACCAGGCTTTCCAGGAATTCAAAAGCATCACTTCCGTCCGCGTTTGCAGAGATTCCTTGACGAGGACGTCGCTCCGTTACGGTTATGTCAACTTTATGTCTCAGCAAGACGCAATTCGTGCAATCAAGGTGAAAAACAATTCTTATCTTTTTGGAAAAGTGATAAGGGTCATGTGGTCACATCGCGATCCTAATGCAAGGAAAAGTGGCAAAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCCATAGATAATGCGGGGCTACATGATTTATTTCAAAAATATGGGAATGTTCTGTCCAGCAAAGTTGTCGTGTATGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATTATGCCATTGAGAAGCTGAATGGCTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAAAAAAGGTGACCGCACTTTGCCTGGCAATGATACCAAGTTTACAAATTTGTACATTAAAAACTTGGACTCAGATATTACGGAAGCACTTCTTCAGGAAAAATTCTCCTCTTTTGGAGAAGTTATTAGCTTGGCTATTGCAAAGGATGCCAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAATCCAGATGATGCTAGAAAGGCGATGGAAACAATGAATGGATTGCAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAGAAGAAGGCTGAACGTGAGCAAATCTTGCATCATCAATTTGAGGAAAAACGCAAGGAGCAAATACTGAAATCAAAGGGCTCTAACCTTTATGTGAAGAACATTGATGACAGTGTTAGTGAAAAAGAACTACGAGATCTGTTTAGTTCTTGTGGCACAATAACTTCTGTAAAAGTTATGCGAAATGACCAAGGGATAAGCAAGGGCTTTGGTTTTGTCTGCTTCTCCAATCCTGAGGAGGCTAATAAAGCTGTGAGCACTTTTTATGGATGCATGTTCCACCATAAGCCACTGTATATTGCTATCGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCAACTATGCACCGCAACAACCAGGATTGGATGGACCTTCAACTGCAGTTGTCCGTGGTGGCTTTCCATCTTACTTCTATCCAAATGTTACTTCACAGATGCTTCAATCTGGGCTTTTGTATCAACCTCTGGGATTGGGATCAGGATGGAGGGCTAATGACTTTACGCCTTCTACTAGATCATTTCAACAATCACAGGTTCCTATTGTTCCTAACGCTACTAGGCATCATAGGCAAAATAGGGGCAGGATGAATTCAGTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAACTGCAACACTATTATCAGCCAATGAACTCAAGAGTCGAGTACTTGGCAGCTTAG 1488 0.4267 MAVPATVAAAPASLYVGDLHPDISDSQLYQAFQEFKSITSVRVCRDSLTRTSLRYGYVNFMSQQDAIRAIKVKNNSYLFGKVIRVMWSHRDPNARKSGKGNVFVKNLAESIDNAGLHDLFQKYGNVLSSKVVVYEDGKSKGYGFVQFESEESANYAIEKLNGSTVRDKQIYVGKFVKKGDRTLPGNDTKFTNLYIKNLDSDITEALLQEKFSSFGEVISLAIAKDANGLSKGFAFVNYDNPDDARKAMETMNGLQFGSKNLYVARAQKKAEREQILHHQFEEKRKEQILKSKGSNLYVKNIDDSVSEKELRDLFSSCGTITSVKVMRNDQGISKGFGFVCFSNPEEANKAVSTFYGCMFHHKPLYIAIAQRKEDRKTQLKLNYAPQQPGLDGPSTAVVRGGFPSYFYPNVTSQMLQSGLLYQPLGLGSGWRANDFTPSTRSFQQSQVPIVPNATRHHRQNRGRMNSVGKAHSGVYIPQLQHYYQPMNSRVEYLAA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03548 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Phac7g03548 495 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Phac7g03548 495 Gene3D - 5 101 IPR012677 -
Phac7g03548 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Phac7g03548 495 PANTHER RNA BINDING PROTEIN 12 76 - -
Phac7g03548 495 FunFam Polyadenylate-binding protein 101 181 - -
Phac7g03548 495 Coils Coil 263 283 - -
Phac7g03548 495 FunFam Polyadenylate-binding protein 4 99 - -
Phac7g03548 495 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 461 IPR006515 GO:0003723
Phac7g03548 495 CDD RRM4_I_PABPs 293 371 - -
Phac7g03548 495 Gene3D - 102 180 IPR012677 -
Phac7g03548 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Phac7g03548 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Phac7g03548 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Phac7g03548 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Phac7g03548 495 SMART rrm2_1 295 367 IPR003954 GO:0003676
Phac7g03548 495 SMART rrm2_1 13 86 IPR003954 GO:0003676
Phac7g03548 495 SMART rrm2_1 101 173 IPR003954 GO:0003676
Phac7g03548 495 SMART rrm2_1 192 264 IPR003954 GO:0003676
Phac7g03548 495 FunFam Polyadenylate-binding protein 277 385 - -
Phac7g03548 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Phac7g03548 495 CDD RRM2_I_PABPs 98 174 IPR045305 -
Phac7g03548 495 SUPERFAMILY RNA-binding domain, RBD 290 383 IPR035979 GO:0003676
Phac7g03548 495 SMART rrm1_1 295 367 IPR000504 GO:0003723
Phac7g03548 495 SMART rrm1_1 13 86 IPR000504 GO:0003723
Phac7g03548 495 SMART rrm1_1 192 264 IPR000504 GO:0003723
Phac7g03548 495 SMART rrm1_1 101 173 IPR000504 GO:0003723
Phac7g03548 495 FunFam Polyadenylate-binding protein 182 276 - -
Phac7g03548 495 Gene3D - 181 276 IPR012677 -
Phac7g03548 495 Gene3D - 277 380 IPR012677 -
Phac7g03548 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Phac7g03548 495 SUPERFAMILY RNA-binding domain, RBD 183 275 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03548 Phac-Chr7 37255578 37260189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03548 12 461 Eukaryotic Initiation Factors Gene Family AT2G36660 56.703 1.71e-179 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03548 K13126 - gmx:100798828 781.556