Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03512 ATGGAGAACTCGCGTAGACCGTTCGATAGATCGCGAGAGCCAGGACCGAAGAAGCCCCGATTGATTGAAGAGCTGGATCGGGCTCCGAATTCGGGTGCGAGACAGTTTCCTCAGCTACAAGTGATTTCTGGGGTCGCAACGTTACCGTCTGCAAGGTTTAGAACAAACGAAAGAGACCTTGAAAGCAATGATTTTGGTCGCCGGGGTGGTTCTGGAGGTGGCGGTTATCAGCCCCAGCCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCGTCTGTCCATCAAAGTATGAGACATCTTTTCGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAATTGGGCTTCACTTCTGCAGTCAATGGCTCATCTGCTTCTGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTTAATCCCAAGTATTTAGAAAGGCAACGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGTTGATGATATGACTGGAGCCATTTCAAACTCAAATGATGACCTAGAGATGCCTGGTAGAACTTTAGGTGTTTTACGACCATGGGTGGATCCTAATATTACTGTTAACGTCAGTTCACGTGAAAATGATCGTGCTCGAAGAGATGCATTCAATGATTCTGTTCCAGAAAAGAGCACCGGTGCATCCTATGGAAGCAATGAATTTGGTTCCAATATTTCAAGGAATTTGGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACTGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCGGGGACCATGCCTGGACAAAGAAATTGTTTGACTCTCAAGTATAGTTTTTTGAATACTGAAGCACCAAAGTCCATGATTTTGGATGCACATCATCAACCAGCAGAAAAAATAACAAGCACACAGAGCAGTGTGATCTCAAATAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTGGTCATGGTACATCTATTGTTAGCAGCTTGAGCAAAGATGCTTGGACTGCTGATGATGATAATTTGGAAGTTGAAGATCGCAACCAAGTCAGAAATCCTTTTGTGGTAAATGCCAATAGAGAAATAGCCATTGAATCTCAAGCCAATGAAAAGAAACGATTTCCTGCATCTCAGCATCATTCATCAATATCATGGAAATTGCAGGAGCAGCACTCTATTGATGAGTTGGATCGGAAGGCTGGTCAGTTGAGCAGATTTGTGTCCACACCGTCTAGTACAAGTGCCTCTACTGCCAGGATGGGGAATCGGCCTTTCCTGTCAAGTGCATCCATAGGATTGCCAGGAGTTGCAGGACCATTTCATTCTTTGGGAGATGAAAACCCTTCTGGACAGTCACCTTTGCGACGGAGGTCACCATCACCGCCAGTAAGTGTGCACTATTCTCATCCCCTGCAAAATCTGGCAGAGCAAGACCTTCCCCAGACTGATAAGGCATCTGAATTTCTGGGAGGTCTACAGAGCCACTATATTAAAGTTTCTTCAACTGCCCTTCCTCTTAATATTCAGGATGGTAACTTACAAAGATCACAACTGAAAAATTTGCAGGGTCCATTCTCTTCAATGACTTTCCAGGCAAGGCATCAGCAGCAATTTGGCACTTCTCACAATGAGGTTACTATTAAGACTGAGAAGCCACCTGTGTCCAAAGTTCCTTTAGCCAGAGAAACTAAAAGTAGCACGAGTACAGGGAATCTTTCAACTCGATTAGGTGTTCGACCTTCACGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCAGTGTCCACAATTGCATTACCATCTTCATTTGGTCCTTCCAGTGATAATTCATCTGCTCTCTCAAAAATACCTCAAAGAAAGGCTGGACAACCGCCTAGGTTATCTACTCTACCACCACCTGCATCCTCTAATGTCAGCAGTGCCTCAGCTCAGACAAGTGATGCCAATAATACCTTGAATCCAATTGCTAATCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAAAAGAATCAACAACTAAGGTGCCCTCTGAGTTGCTGACTCGGTTGGAAGAAGAAAGCGATAGCATTACCACTGGTAACTCTTTGCCTGTGGCCTCAGCTTCTGGTTCTGCAGCTGTTCCAGTCCCTTCTATCAAAGATGAGGTTGATGACACTGCAAGAACACCCATATCCTTGTCTGAATCAACCAGCCCAGGAGTTGTAAATCTCATTGGCTTCGAGTTTAAGCTTGATGTATTACGAGAATTCCATTCATCTGTAATTAGTGGTTTATTTGATGACCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTTAGATTCCAGAAACAGTTAAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGATAATGGTTTAACTAAGGCATCGAGATGGTATCTTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATGTGTATCAGAGAATGAGGCTGATTCTGTAGATACATATGGCAATGAAGCAGACAGAAGTCAAGAAGATGCTACTGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTGTTGTGCGGTGAGCTATTTGAAGATTTTTACTGTGAGGAAAGTGGGGGGTGGATGTTCAAAGGAGCTGTTTACTTTGCTAAGTCTGATAGCAACAGTGAGATGGGATTTGGAGATACGAGTACAGGAAGGGGTCCCATCATTCATGCAAATTGCTTATCAGATAACTTGATTTCCAGTGTCCCTGAGATGGAGCAGGATTAA 3084 0.4407 MENSRRPFDRSREPGPKKPRLIEELDRAPNSGARQFPQLQVISGVATLPSARFRTNERDLESNDFGRRGGSGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVDDMTGAISNSNDDLEMPGRTLGVLRPWVDPNITVNVSSRENDRARRDAFNDSVPEKSTGASYGSNEFGSNISRNLGLGISRPGGRVTESGHDKGWYNKSGVVAGTMPGQRNCLTLKYSFLNTEAPKSMILDAHHQPAEKITSTQSSVISNSWKNSEEEEYTWDEMNSGLTGHGTSIVSSLSKDAWTADDDNLEVEDRNQVRNPFVVNANREIAIESQANEKKRFPASQHHSSISWKLQEQHSIDELDRKAGQLSRFVSTPSSTSASTARMGNRPFLSSASIGLPGVAGPFHSLGDENPSGQSPLRRRSPSPPVSVHYSHPLQNLAEQDLPQTDKASEFLGGLQSHYIKVSSTALPLNIQDGNLQRSQLKNLQGPFSSMTFQARHQQQFGTSHNEVTIKTEKPPVSKVPLARETKSSTSTGNLSTRLGVRPSRTGGPSPATLISSVSTIALPSSFGPSSDNSSALSKIPQRKAGQPPRLSTLPPPASSNVSSASAQTSDANNTLNPIANLLSSLVAKGLISAEKESTTKVPSELLTRLEEESDSITTGNSLPVASASGSAAVPVPSIKDEVDDTARTPISLSESTSPGVVNLIGFEFKLDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQLNRHLEWHATRDREDNGLTKASRWYLKSSDWIVGKAECVSENEADSVDTYGNEADRSQEDATVVADENQCLCVLCGELFEDFYCEESGGWMFKGAVYFAKSDSNSEMGFGDTSTGRGPIIHANCLSDNLISSVPEMEQD* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03512 1027 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 56 1015 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Phac7g03512 1027 MobiDBLite consensus disorder prediction 657 696 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 243 270 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 1 27 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 739 756 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 796 811 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 217 233 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 217 236 - -
Phac7g03512 1027 Pfam CID domain 91 200 IPR006569 -
Phac7g03512 1027 SMART 558neu5 85 207 IPR006569 -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 1 36 - -
Phac7g03512 1027 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 709 724 - -
Phac7g03512 1027 CDD CID_Pcf11 87 199 IPR047415 -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 709 756 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 473 492 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 53 78 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 666 696 - -
Phac7g03512 1027 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Phac7g03512 1027 Gene3D - 82 207 IPR008942 -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 543 573 - -
Phac7g03512 1027 MobiDBLite consensus disorder prediction 794 814 - -
Phac7g03512 1027 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Phac7g03512 1027 ProSitePatterns Zinc finger C2H2 type domain signature. 876 896 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03512 Phac-Chr7 36954840 36965121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03512 73 425 C2H2 Transcription Factor Family AT4G04885 39.394 6.21e-59 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac7g03512 CID 8.7e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03512 K14400 - gmx:100807857 1332.39