Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03494 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGAGGGTGAACCTGACCCGAACTGGAATCATATGCATACCGATCAACAATATGTGAACCTTGGTAGAAGTACCGCTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCGCCAAGGTCAAATGGATATGCCTCCACAAGTCTCAACATTGAAGCACCCCCTCATCAAACAGATGTATCAGGCACTTCTCATGATCATTTTCTGCATTCATCAAGTGGCGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCCTCTAGTTCCAATTATGACAGACAATCATTTCCTGTTGCTGATGGGGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAACGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAAAAGCCCAATATGGATTCTCTATATATGCCTTGGGATCATGTGAATATGACACCCGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGATAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCCAACTTGGCTAGGACCCATTTATCAAATACTCATTCACACAACTCATTCCCTACTGGTCCCCAAATGGATCATTCTAGCATGGTAGATCTTTCAACTCAAACTTCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTATGTCCTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCACGACGCAAGTCATTTCCTTGTTGGAAGTGGTTCTAGTAATGCTCCTGTAGATATTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAATAATAGTCAGGCTCAACCTGCAAGAGGAGTTCACAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGGTTCTTCCAGCTTGCGCTTGGGTCGCATGACACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCGCTGTATGGTAGGAATATGCTTGATCAGCATAGAGAGATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATCTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGACGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGATGATGTCGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAAAAAGTGGTTATCTATGAAGAAAGTGTGTCCTATCTGCAAAGCTTCTGCTTTACCTGAAGAAACGAAGGATAAATAA 1647 0.4281 MGHRHLYSSSPMFEGEPDPNWNHMHTDQQYVNLGRSTASDNGSFIYPLENMSIDSISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLHSSSGGMFYAVSENYVHQPSSSNYDRQSFPVADGGFIDLTMGNGRGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPNMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGDSSLRNVRSRSTLDLESNLARTHLSNTHSHNSFPTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCPAHGRVPSSDANAFNHDASHFLVGSGSSNAPVDIGGFHNEFGTSRNPTAPQSFHNNSQAQPARGVHSNYSQRSTPTFRGSSSLRLGRMTPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEGFMIVDRTSLYGRNMLDQHREMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEDEACAICLEEYKNVDDVGTLKACGHDYHVSCIKKWLSMKKVCPICKASALPEETKDK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03494 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 119 541 IPR045191 GO:0061630
Phac7g03494 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Phac7g03494 548 SUPERFAMILY RING/U-box 485 540 - -
Phac7g03494 548 SMART ring_2 495 536 IPR001841 -
Phac7g03494 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Phac7g03494 548 MobiDBLite consensus disorder prediction 244 264 - -
Phac7g03494 548 CDD RING-H2_RNF24-like 493 540 - -
Phac7g03494 548 Pfam Ring finger domain 494 537 IPR001841 -
Phac7g03494 548 MobiDBLite consensus disorder prediction 335 369 - -
Phac7g03494 548 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 460 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03494 Phac-Chr7 36767743 36776555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03494 1 547 C3H Transcription Factor Family AT2G37150 40.283 4.29e-100 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03494 - - gmx:547939 976.081