Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03413 ATGATGGAAACTAGTTACGCATCGCGAGTGTTTCGCGGTGTTCGGTTCGTTCTCCGTGGCTTCAATCCCGCCGCCGAAAGCCAGATCCGGCTTAAGCTTGAGGATGGCGGTGGAATTGACGCAGAGCAGTACGGTGGGAGTTGCACACATGTCATTGTCGATAAGATTGCTTATGACGATCCTCTTTGTGTTACTGTTAGAAATGATCGGAAGACGCTTGTCACTGCACTGTGGGTTGATCACAGTGCTGATATTGGAATGCCCGTTGATGCCTCTTCGATTATGTATAGACCTCCTAAAGACTTAGATGGAATACCAGGTGCAAAAGGTTTGATAATGTGCTTGACTGGTTATCTGCGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAGTTTTCCAAACCATTGGTGGCGAACAAGGTTACTCATCTCATATGCTATAAATTTGAAGGAGAGAAGTATGTGCTTGCAAAGAGATTGGGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGCTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGATGGTGGAGGAAGAGGCTAAGGATTCTGAAGAAGAGGGTGAAGATTCTAAGCTGAAACAATCAGGGGGGAGAAATATAAAACAAAGCCCCGTTAGTTCGAAATTTGACCAAGCTGCAACTCATGGATTGTTGAAATCAGCAATAGAGGCATCGAACAACTTACCAAATTCTACTGGTCCACGGGTTTTGCCAGATGTCAATAATGGTGAAGACTCTTTAACCATTCCAGGAAAGAAGATAAAATCTGATCGAGACTTTAGCATTCAGAATGTTGATGATTCAAAGATAAGCTATCAGACTCCTGATATTTCTAGATTACCTGACAAATATACAAAGACGACTGAGTCTAAGAATGCTGATTTTCCAAAGGCACTTGGGTGCCAGGGCCCTGGAAATACGGCAAATACAAAATCATCTGGTCAGCAGTCCGGTCTGCATGATAACGCTATGGAGTCTGAGAAGTTGATAAGTAACTTGACATCAACTTCTGCAAGTGCAGCTGGAGTTGCACATTCAAATGAAAAGCTTAGAACTACTAGTTATTCTAAGAAGAACCAAAGGGAATTTTCTGTCCCAAGGATCTTAGATGGAAGCTCAGGCAGAGAAGGCAACAAATGTGAAAACAGTAAGGTTCACGAGGCAAGTGAGTTTATCAATTCTACCAGTGTTGAAATTTCTGGGAGAGAAAATGATTTTAATAAAGAGGAGGAACCAATTAGTTTATTGCCTCAAAAGAGGATTAATGAAACTTCTTTTACGAAATTAAAATCAAGAAAGGTGTCTTCTGATGCAAAAATCTCCATCCAATCAGCAAATGGTAAATCTCAAGGATTAAAAGTGACATCTAAGGTTGATGAGCCACCCAAAGCTGATGGCTATTGTTCTAAAGGCAAAGATGGTATGAATAACTCAAACACTTGCTTAGTTTCAAAACCTGCTGGTTCTAACTACAACTCACTGGCATTTGATGAGCATTTCTCAAGAAATGCAAGCCCAGAATCTGCTCAGTGTGATAGTATCTATCAGAATAGTCCACAAACGGCTGTTCATAGCTTAAGTGAGTCTAAAACTAATGGCAAGCCTGGTGTCACAAGTTCTGCAATGCGACAAGTTGGTGGTAATGAAGCAGGGCAACATATCAGTAAAAGTATTGATTGTTCATCAATGGGAAACAAAAACTCAAATAATGTGGAATCCACTGGTTGTACTAACTTGGATTTAAGCAATGAAGTATGTAATAAACAGGTTAGAAAATCACCCAGAAAGAAGTCAGTTGCCAAGAGAATTTCGGGTTCTAAACCTATAGTAGGTGCCACTGCTAGACATAAAAGATCACTTTCCCTGAATAAAACTATCCTGCAAAGTGAAGGTGTAACTTTATCCAGCGGAAGCAAAGAGATTTGTGATGCGAAGATGCATAAGGGATGTCCCCAAATCCGGGATATTAACAATACGATGGAGCAAGAAGCAGTTAGTAAAAATACAGACGATGCTTCTGACAGAGCTGAGTTCTTGACAGATGAAACCGAGGCTCCAGATGATAAATGTGAATTTGAATTTGGAATGGCCCTAAATGAAGAATCAGTTCATCCTTCGGAAAAGCCAAATAGAGCAACAGAAGAGAAGTCAGAAGCAATTTGCCCTGCAACAAAATGTGAAGAGGCAAAGAAAGGCACAAATAAAACAGAAATTCAGAAAACGTCTTTATTGGTAGTAAAGAATCAAGCAAAAAAACGTGCTGCTGGCAAAGCCAATGCCACAGTTAGTAAATACGCAGACGATGCTGGTGGCAGAACTGAGGCTTTTGATGATGAAACCGAAGCTCCAGATGACAAACTTGAAAATGAGTTAGGAATGGCACCTGAAGTAGAATTGGTTCATCCTTCAGAAAAACCAGATACATCAACAGGAGAGAAGTCAGAAGCAATTTGCCCCGCGCCAAAATGTGAAGAGGTAATGCCTCCTAAAAGAGTCACAAATAAAACTGAAAAACAGAAATCTTCACTGGTAGTAAAGCACCAAGCAAGGAAACGTCCTGTTGGTAAAGCCAAGGCCACAGTTTCCAAGGATTTATCGAAATCAAAAGTGGCAGTATCTAGGGAGAAGGTTCCTAATGAAACGGGGCATGAGGCAGAGATAGAAACCACAGAAGAAATGCCCTTTCCTGCTGATAGACGTGACAACTCAGCCTTAGCAAGAAATAAGTCAGACAATTTAGCTGAAGAAGAGAAGGAGAATAGACCAATTGATGGAGTGCAGGATCCTGTAAAGGGCATAAGCGATGACAATCCAATTTATAAATCTAATGTAAGGCCAAGAAAGATGAAGTCTACTAAAGTGGGGCTCAATCCATCTATTTCAGAATCTAACACGAGAGTTAAAACTGAAGCGGCATGTTTTATATTAAGCGGGCACCGCCTACAGAGAAAAGATTTTCAGCAAGTAATCAAGCGCTTAAAAGGAAGGGTTTGCCGGGATTCTCACCAGTGGTCATATCAGGCGACACACTTTATAGCTCCAGACCCCATACGCAGGACTGAGAAATTTTTTGCTGCGACTGCATCAGGAAGGTGGATTCTGAAAACTGATTACTTGACTGCCAGTAGTCAGGAAGGAAAATTCTTGACGGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGCGAGGATGGCGCAATCAATATGGAAGCTCCAAGAAAGTGGAGGCTAGTTAAAGAAAAAACAGGTCATGGCGCCTTCTATGGAATGCGTATTGTTGTATACGGCGATTGCATTGCTCCGCCTTTGGATACTCTGAAACGTGTCATCAAAGCAGGCGATGGAACAATCTTAGCTACTTCTCCTCCTTATACACGCTTCCTTGGTACCGGAATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGATATGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTGGAGAAGCATGTTTTATATGGCACTCATGCTTGGGCAGAGAGATCGTTTGATAAACATAACAGCAGGGTAGAAGAGATTGTTGCTCCTGAGGATTCCACTGATGATGATGATGATGATGTAACTTGCCAAGTGTGTGGATCCCGCGACAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCTGTTGGGTGTGGAGAGGGTACTCACATCGATTGCTGCGATCCTCCACTAACAGATGTACCTGAGTACGATTGGTTTTGTTCAAAATGCAGTACCACCCGAAACTCCTCAAACAATCCCACTAAAAGGAAAAAGAGTGTTTTATCATAA 3936 0.4202 MMETSYASRVFRGVRFVLRGFNPAAESQIRLKLEDGGGIDAEQYGGSCTHVIVDKIAYDDPLCVTVRNDRKTLVTALWVDHSADIGMPVDASSIMYRPPKDLDGIPGAKGLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYVLAKRLGTIKLVNHRWLEDCLKEWLLLPEDKYNKSGFELEMVEEEAKDSEEEGEDSKLKQSGGRNIKQSPVSSKFDQAATHGLLKSAIEASNNLPNSTGPRVLPDVNNGEDSLTIPGKKIKSDRDFSIQNVDDSKISYQTPDISRLPDKYTKTTESKNADFPKALGCQGPGNTANTKSSGQQSGLHDNAMESEKLISNLTSTSASAAGVAHSNEKLRTTSYSKKNQREFSVPRILDGSSGREGNKCENSKVHEASEFINSTSVEISGRENDFNKEEEPISLLPQKRINETSFTKLKSRKVSSDAKISIQSANGKSQGLKVTSKVDEPPKADGYCSKGKDGMNNSNTCLVSKPAGSNYNSLAFDEHFSRNASPESAQCDSIYQNSPQTAVHSLSESKTNGKPGVTSSAMRQVGGNEAGQHISKSIDCSSMGNKNSNNVESTGCTNLDLSNEVCNKQVRKSPRKKSVAKRISGSKPIVGATARHKRSLSLNKTILQSEGVTLSSGSKEICDAKMHKGCPQIRDINNTMEQEAVSKNTDDASDRAEFLTDETEAPDDKCEFEFGMALNEESVHPSEKPNRATEEKSEAICPATKCEEAKKGTNKTEIQKTSLLVVKNQAKKRAAGKANATVSKYADDAGGRTEAFDDETEAPDDKLENELGMAPEVELVHPSEKPDTSTGEKSEAICPAPKCEEVMPPKRVTNKTEKQKSSLVVKHQARKRPVGKAKATVSKDLSKSKVAVSREKVPNETGHEAEIETTEEMPFPADRRDNSALARNKSDNLAEEEKENRPIDGVQDPVKGISDDNPIYKSNVRPRKMKSTKVGLNPSISESNTRVKTEAACFILSGHRLQRKDFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAATASGRWILKTDYLTASSQEGKFLTEEPYEWHKNGLSEDGAINMEAPRKWRLVKEKTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTRFLGTGIDYAVVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLEKHVLYGTHAWAERSFDKHNSRVEEIVAPEDSTDDDDDDVTCQVCGSRDRGDVMLICGDESGSVGCGEGTHIDCCDPPLTDVPEYDWFCSKCSTTRNSSNNPTKRKKSVLS* 1312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03413 1311 Gene3D BRCT domain 1108 1209 IPR036420 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 462 485 - -
Phac7g03413 1311 Pfam PHD-finger 1242 1293 IPR019787 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 249 277 - -
Phac7g03413 1311 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 5 1307 IPR044254 -
Phac7g03413 1311 Gene3D BRCT domain 991 1107 IPR036420 -
Phac7g03413 1311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1226 1310 IPR013083 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 202 232 - -
Phac7g03413 1311 CDD BRCT_TopBP1_rpt7 998 1071 - -
Phac7g03413 1311 Pfam twin BRCT domain 111 175 IPR001357 -
Phac7g03413 1311 ProSiteProfiles Zinc finger PHD-type profile. 1239 1295 IPR019787 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 893 950 - -
Phac7g03413 1311 ProSiteProfiles BRCT domain profile. 999 1081 IPR001357 -
Phac7g03413 1311 Gene3D BRCT domain 1 95 IPR036420 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 542 576 - -
Phac7g03413 1311 Coils Coil 198 218 - -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 821 985 - -
Phac7g03413 1311 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Phac7g03413 1311 Pfam BRCA1 C Terminus (BRCT) domain 1002 1066 IPR001357 -
Phac7g03413 1311 SUPERFAMILY BRCT domain 105 192 IPR036420 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 298 409 - -
Phac7g03413 1311 SUPERFAMILY BRCT domain 8 93 IPR036420 -
Phac7g03413 1311 SMART PHD_3 1241 1293 IPR001965 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 853 869 - -
Phac7g03413 1311 SUPERFAMILY BRCT domain 999 1085 IPR036420 -
Phac7g03413 1311 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 462 478 - -
Phac7g03413 1311 SMART BRCT_7 8 86 IPR001357 -
Phac7g03413 1311 SMART BRCT_7 1109 1196 IPR001357 -
Phac7g03413 1311 SMART BRCT_7 990 1071 IPR001357 -
Phac7g03413 1311 SMART BRCT_7 99 183 IPR001357 -
Phac7g03413 1311 MobiDBLite consensus disorder prediction 328 375 - -
Phac7g03413 1311 Gene3D BRCT domain 100 225 IPR036420 -
Phac7g03413 1311 SUPERFAMILY FYVE/PHD zinc finger 1231 1297 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03413 Phac-Chr7 36053792 36060522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03413 129 218 Core DNA Replication Machinery Family AT4G02110 72.222 1.14e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac7g03413 BRCT 4.4e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03413 K10728 - gmx:100799144 1954.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac7g03413 7 36053792 36060522 Phac7g03413 7 36053792 36060522 ECH