Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03404 ATGGAGCTCTCTGTGATTGCAAGAAACATGGAAGAAGTTGTCTTGTTGGTTGATGATTTGGAATCGGTTTCTGGTATTTCTCGCTGTAGAATATGTCATGAAGAGGAATTTGAGAGCACCAAAACCTTGGAAGCTCCTTGTGCTTGTTCGGGGACAGTTAAGTTTGCTCATAGAGACTGCATTCAGACGTGGTGCAATGAGAAAGGAAACACAACTTGTGAAATATGTCTCCAGCAATACGAACCTGGATATACAGCAGTTCAGAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATATCAATGACTGAACGAGAACCGTTAAACACAAGAATAATTGAGGGAAACAATTACTCTGAATGCACATATGCTGCGGATAGAAGCGCAGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACTCTGATCTTGCTTGTAAGACATCTTTTTGCACTCCTTAGCGATGGAATGGAAGATTATCCTTTTACAGTTCTTACGGTCTTTTTACTGAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGACGATCGGAGCCATACATAATAATATCAAGCGTTACCATCATCAGGATTCTGATGATGACTCATCCATATCAGATGGAGAGGATGAAGAAAATGGGACACCAGATGATGCAATTTTAAGACATTCACAATCATAA 702 0.4017 MELSVIARNMEEVVLLVDDLESVSGISRCRICHEEEFESTKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAVQKKSQIADAAMTIRDSLQISMTEREPLNTRIIEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLSDGMEDYPFTVLTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHQDSDDDSSISDGEDEENGTPDDAILRHSQS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03404 233 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Phac7g03404 233 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 24 200 IPR033275 -
Phac7g03404 233 SUPERFAMILY RING/U-box 27 81 - -
Phac7g03404 233 MobiDBLite consensus disorder prediction 205 233 - -
Phac7g03404 233 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Phac7g03404 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 87 IPR013083 -
Phac7g03404 233 SMART ringv_2 28 77 IPR011016 GO:0008270
Phac7g03404 233 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Phac7g03404 233 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Phac7g03404 233 CDD RING_CH-C4HC3_MARCH 29 76 - -
Phac7g03404 233 Pfam Protein of unknown function (DUF3675) 82 191 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03404 Phac-Chr7 35975840 35978745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03404 29 76 C3H Transcription Factor Family AT2G37950 44.898 3.20e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03404 - - gmx:100776501 403.675