Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03253 ATGCCTCTGTATGAGTTATACCGTCTGGCTAGAGAGAAGCTTGGTACAGAGAATAACGGCACACGTGCATCTGATCAATGTTCCTCACCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCGAGCCAGGGTCAGTCTAGTAGAGTTAGAAGGAGCCCATCTTGCAGAAGTTTGCCATCTCACTGCTTGCCATCACACAGTCCAAAGGGTAGAGACAAAGATGTAGGATGTGGTGCCAGCAAGATGGGAAAATTTAGAGATTTAGACTCTGGATTTAGTGAAATTTCAATGTCGGTGCCGTCCCGTGAAATTGATTTCTGTCAAGACGAAGATGTGTTACCTTGGTTTGATTACGCAGCAATGGATGGTTCTTTGCAACATGACTATGGTTCTGATTTCCTCCCTACCTCAACTAGTTTTACTCTATTGGATAAAAAAAGTCATACCAATATGGCTTTGAGGGAGTCTCATAAAACTTCTGAAGAACATGGGAGTGTTTTCAAGGGTTCTTCAGCTGAACAGGTTGAGAATACCGGACCCAAATCTAGCACAAGTCAGTTATACCCTCCATCATTGCATCATTGTCAAACATCTTTTGTATCTTCAAGATCCAGAGCGTCAGACATAACTGAAAATAACAATACTAGTAATGCAAACCAGGATGCCACTTATGGCGAAATTACCAATTTTCTATCTTCCTCAAGTGATTTTTCTAGCCCAAAGGGGAAGAAGCAAGAGCCACCTCTGCCTGGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTCGCTAGGCCTGCTGCAATGGTAAGAGCTAATCTTCAGAACATTGGCTTGAAATCTGGTTTGTCTTCAGCAAGACCAGACAGTATGGAAATTAAGAATAACGGTGCAGCTGCAGCTAGCAGCAATCCTCCTGAATCAATTGTTATTGATTCAAGTGGTGAATGTTCGAAGGAACTGACCATGCACTGTCAGCAGGTTGTGGATCAATCTAGGTCCAGGACCGATTTGAACACTTCGCTGTCGAAAGCTGTTGAACAGAATGCAGTACTTTCTAAGCAGTCAGAGCCTGCTTGTAATGAGAGTTCCACTAAGATTGACCAAATTGCCGATCAAGTTCTTGGTGACAATGGTGCTAAAGGGCAGACAACTACTGAAAAAAGTATGGAGGCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAACGGTGCAGACAGAGGTTCAGATGAGCCAAATCAAAATTTGAAACGCAAAAAAAAAGACACCGATGACTCTGAGTGCCATAGTGAAACAATTTACATGAAGGATGCTGAAGAAGAATCAGCGGGTGTTAAAAAGACAGCTGGAGGGCGTGGAGGTGCAGGTTCCAAGAGAACCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGAATCAACGAGAAGATGCGTGCGTTGCAAGAACTCATTCCAAATTGCAATAAGGTGGATAAAGCCTCAATGCTGGACGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACCTGTGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGAGTGGGAATGCCTGACATGAATGGTGGATCTTTAAGATTCCCTATGATTCAGGTGCCCCAGATGCAAGGAAGTCATATCCCTCTTGCCCATATGTCTGGACCTACTGCTTTACATGAGATGGCCAGATCAAATCTTCCAGGGCTTGGGCTTCCTGGACAAGGACATCCCATGCCAATGCCGCGAGCCCCCACGTTGCCTTTTTCAGGAGGACCTATCATGAATTCACCAGCTCTGGGGCTACATGCCTGTGGATCATCAGGACTTGTTGAAACCGTGGATTCAGCTTCTGCATCTGGCTTAAAGGATCAAATGCCAAATGTTGGCCCAGTACTTAAGCAAAGCACTGGTGGCCGCGACTCAGCAAGTCAGATGCCTACACATAGTGAGGCAGCTGTTGTTCAATTTGACCAATCTGCTTTGGTTCATAGTAGCGGTCATACCTCTGAGGCTAATGCCAATGGAGCTGTTAATCCTTGTCCCCGCAGATAA 2187 0.4486 MPLYELYRLAREKLGTENNGTRASDQCSSPENDFFELVWENGQISSQGQSSRVRRSPSCRSLPSHCLPSHSPKGRDKDVGCGASKMGKFRDLDSGFSEISMSVPSREIDFCQDEDVLPWFDYAAMDGSLQHDYGSDFLPTSTSFTLLDKKSHTNMALRESHKTSEEHGSVFKGSSAEQVENTGPKSSTSQLYPPSLHHCQTSFVSSRSRASDITENNNTSNANQDATYGEITNFLSSSSDFSSPKGKKQEPPLPGNGSSSTIMNFSHFARPAAMVRANLQNIGLKSGLSSARPDSMEIKNNGAAAASSNPPESIVIDSSGECSKELTMHCQQVVDQSRSRTDLNTSLSKAVEQNAVLSKQSEPACNESSTKIDQIADQVLGDNGAKGQTTTEKSMEAAVASSSVCSGNGADRGSDEPNQNLKRKKKDTDDSECHSETIYMKDAEEESAGVKKTAGGRGGAGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPVGVGMHMGYGMGYGVGMPDMNGGSLRFPMIQVPQMQGSHIPLAHMSGPTALHEMARSNLPGLGLPGQGHPMPMPRAPTLPFSGGPIMNSPALGLHACGSSGLVETVDSASASGLKDQMPNVGPVLKQSTGGRDSASQMPTHSEAAVVQFDQSALVHSSGHTSEANANGAVNPCPRR* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03253 728 MobiDBLite consensus disorder prediction 706 728 - -
Phac7g03253 728 PANTHER TRANSCRIPTION FACTOR PIF3 1 690 IPR044273 GO:0003700|GO:0006355
Phac7g03253 728 Gene3D - 461 524 IPR036638 GO:0046983
Phac7g03253 728 MobiDBLite consensus disorder prediction 706 720 - -
Phac7g03253 728 CDD bHLH_AtPIF_like 466 528 IPR047265 -
Phac7g03253 728 FunFam Basic helix-loop-helix transcription factor 461 524 - -
Phac7g03253 728 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 466 515 IPR011598 GO:0046983
Phac7g03253 728 SMART finulus 472 521 IPR011598 GO:0046983
Phac7g03253 728 MobiDBLite consensus disorder prediction 155 262 - -
Phac7g03253 728 MobiDBLite consensus disorder prediction 169 245 - -
Phac7g03253 728 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 463 526 IPR036638 GO:0046983
Phac7g03253 728 MobiDBLite consensus disorder prediction 383 415 - -
Phac7g03253 728 Pfam Helix-loop-helix DNA-binding domain 470 516 IPR011598 GO:0046983
Phac7g03253 728 MobiDBLite consensus disorder prediction 383 471 - -
Phac7g03253 728 MobiDBLite consensus disorder prediction 416 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03253 Phac-Chr7 35020811 35026008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03253 1 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.953 2.14e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac7g03253 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03253 K12126 - gmx:100794974 1119.76