Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03232 ATGACTAGGCAGAAAGTGAAACTTGCCTATATCAGTGATGTGACTGCAAGAAAATCCACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGTGAACTCACGATTCTGTGTGGGATCCCAGCTTGTGCTATAATTGCAAGTCCTTTTGAAGCTAAGCCGGAGATATGGCCAGATCCAGAGGGAGCCAAGCAAGTGATTCAGAGGTATTTGGATGCATCTGTGATAGATGAAAGCAAGAATATGAATCAGGAGAGTTTCCTCATGCAGAAGATTGCCAAAGCCCAGGAACAGCTGAAGAAGCTGCGTCAGGAGAACCAAGAAAAGGAGAAGATCTTGTCTATGTTCAAGTACATGCAAGGTGAAGACCTCCCAACTGATGTTCAAGAACTGAAACAACTCAACAAGCTCATTGAGAACAGTATGAAGGAAACCAAGAACAAGATGGATGAGCTCAATTGTGAGTCTATGTAG 477 0.4298 MTRQKVKLAYISDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIIASPFEAKPEIWPDPEGAKQVIQRYLDASVIDESKNMNQESFLMQKIAKAQEQLKKLRQENQEKEKILSMFKYMQGEDLPTDVQELKQLNKLIENSMKETKNKMDELNCESM* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03232 158 FunFam Agamous-like MADS-box protein AGL92 13 108 - -
Phac7g03232 158 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Phac7g03232 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac7g03232 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac7g03232 158 PANTHER MADS BOX PROTEIN 3 151 - -
Phac7g03232 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac7g03232 158 Coils Coil 86 113 - -
Phac7g03232 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phac7g03232 158 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Phac7g03232 158 Coils Coil 129 156 - -
Phac7g03232 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03232 Phac-Chr7 34995458 34996234 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03232 1 153 MADS-box Gene Family AT5G26630 47.436 1.18e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac7g03232 SRF-TF 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03232 - - var:108325536 278.485