Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03230 ATGGCAGGTAATAGACAGAAGAAGTCTTCTTCCAGTTTCTTCTCTATTTTCAACCTCTTCTCTTCTAGGAAGCCCAGAGGAGGCTACTATGATGCCCCTGATTCCAGCCGCAGGGTTTGGCCTAGTGATTATGACAAAGGTAACTGGGGTGTTGCTGAGCCCAATATTGACATGAAAGCTGAAGCTTTCATAGCCAAGAAGAAATTGAAACTTGCTTTTATCTCTAATGACATGGCAAGGAAAACCACTTACAAGAGAAGGAAGAAGGGTATCATGAAGAAGGTGGATGAACTGGCCACCCTCTGCGGGATCTCAGCTTGTGCTGTAATTTCTAATCCTTTTGATTCTGAGACAGAAGTTTGGCCAAATCCAGAAGGAGTGAACAAGGTGATGGAGAGGTTTAAGAATGCATCTGTGCTAAACAAAAGCAGGAATGTGAACCACGAAAGCTTCATGATGCAAAGGATCGTGAAAGCACAAAATGAATTGAAGATGCAACGTGAAGAGAACTATGAGAAGGAGATTACCTTGTCCATGTTTCAGTTCATGCAAGGTGAAAACCTGCCAAGTACCGTTGAAGAAATCAAAGAAATCCACAAAATGATTGAGAAAAATATAAAAGAGATTGAGAATAAGTTGGCTGCACTCCACTGTGAGTCATGA 663 0.4178 MAGNRQKKSSSSFFSIFNLFSSRKPRGGYYDAPDSSRRVWPSDYDKGNWGVAEPNIDMKAEAFIAKKKLKLAFISNDMARKTTYKRRKKGIMKKVDELATLCGISACAVISNPFDSETEVWPNPEGVNKVMERFKNASVLNKSRNVNHESFMMQRIVKAQNELKMQREENYEKEITLSMFQFMQGENLPSTVEEIKEIHKMIEKNIKEIENKLAALHCES* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03230 220 PANTHER OS06G0632400 PROTEIN 1 67 - -
Phac7g03230 220 FunFam Agamous-like MADS-box protein AGL80 76 160 - -
Phac7g03230 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 73 113 IPR002100 GO:0003677|GO:0046983
Phac7g03230 220 ProSiteProfiles MADS-box domain profile. 64 110 IPR002100 GO:0003677|GO:0046983
Phac7g03230 220 SUPERFAMILY SRF-like 65 144 IPR036879 GO:0003677|GO:0046983
Phac7g03230 220 Coils Coil 192 219 - -
Phac7g03230 220 PRINTS MADS domain signature 66 86 IPR002100 GO:0003677|GO:0046983
Phac7g03230 220 PRINTS MADS domain signature 86 101 IPR002100 GO:0003677|GO:0046983
Phac7g03230 220 CDD MADS_SRF_like 65 148 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac7g03230 220 Gene3D - 77 179 IPR036879 GO:0003677|GO:0046983
Phac7g03230 220 SMART madsneu2 64 123 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03230 Phac-Chr7 34967363 34974442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03230 66 186 Type I MADS-box Gene Family AT1G65330 47.541 3.40e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac7g03230 SRF-TF 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03230 - - var:108324686 212.231