Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03206 ATGCCAGCGAAGAAATATTACTGCGACTACTGCGACAAGCAATTCCAAGACACACCAGCCGATCGGAAACGACACGTCCAGGGTATTCAACACCAACAAGCCAAAGCTCGCTGGTACGATTCCTTCAATCAACACCACCAACAAATCCCTAATCCACCCCTTTGCTTTCACTTCCTCAACACGGGTTTTTGCCGTTACGGCCACTCTTGCAAGTACCTTCATCCCACTCCCAACAACACTACACAGCACGCTCCAATCCCCTCACCAGTTGTGCATGCAGGAAATGTGGTAGGAGTGTCATTGGGAAATTTGCCCCCGTCGCTGCAGCCTCCGCCGGAGGCTGGGTATCCCCATCTCCCCTTTGTGGATTGGGGATAG 378 0.5238 MPAKKYYCDYCDKQFQDTPADRKRHVQGIQHQQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYGHSCKYLHPTPNNTTQHAPIPSPVVHAGNVVGVSLGNLPPSLQPPPEAGYPHLPFVDWG* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03206 125 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Phac7g03206 125 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Phac7g03206 125 Gene3D Classic Zinc Finger 3 48 - -
Phac7g03206 125 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Phac7g03206 125 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Phac7g03206 125 SUPERFAMILY CCCH zinc finger 49 77 IPR036855 GO:0046872
Phac7g03206 125 SUPERFAMILY beta-beta-alpha zinc fingers 4 49 IPR036236 -
Phac7g03206 125 PANTHER NUCLEASE-RELATED 1 125 - -
Phac7g03206 125 Gene3D - 49 93 - -
Phac7g03206 125 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03206 Phac-Chr7 34823314 34825168 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac7g03206 zf-U1 9.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03206 K13152 - gmx:100527203 210.69