LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac7g03149	ATGGGAAGCTCTAGCAGGAAGAAGGAGCAAGATCTGGAGTTAGAGAAAGTTCGCTTAATCAGTTTAGCTCTCGATTTCGGCTTCGACGAATCCTCCGCCAACAAATGCCTCCACCGTCTCATCTCTCTCTACGGGGAGGACGGTCGCGATTTCATTACCGTCGAGCACTGCGGCGACGATTTTCTCGTGACTCTAGCGGAGTCGATGCAGGCCACTGAAGATTGGGATGACCTTCAGGAAATGGAATCACAAGCGTGCGGAACCTTGACGCACGTGCTCGACAAAACCGTTGCCCCGGGTGCCCATGCGGATAACGACCACACTTCGAGAAGCTTCATTAATGTCGTTGGCGACTCGCCTCAACTGCAGAAACGCAAACGCCGCGCCAATGTAGTCGAGTTGGATTCGAGTGACGATGAGGATATGCACTGTAGTGTTCCTAGGGGAAAATCTGTGGATTACAGAAGTGGCATCACTCAAGGCTCCGTTTCATCAACTTCCAGTAAAATGCAATCCTCCTTTGCATCAAGGGATAAAAGCGGTACTCTCACTTACGAAGAATTGCAAGCTCTAGATGATATTGAATTGGCCAATGTTGTTATCTTTGGTAATAGTACATTACGACCATTGCAGCATCAAGCATGCAAAGTAGCTTTGGCAAAGCAAGATTCCTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTTACTGTAGTTGTATCTCCACTACTGTCTCTCATTCAGGATCAGATAATAACTCTAAACCTCAAGTTTGGTGTACCAGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGGCCACAGCTGTGCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTATATTTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTGGAGATTCTAAAATGCATGCATCGGAAGGGACAACTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTCAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCAAAACTTTCCAGATGTACCAGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGAGGACGTATTAAATGCTCTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGTTTTGACAGACCAAATTTGAAGTATGAAGTGATTGGTAAGACAAAGGAACCACTAAAGCAGCTTGGACAGCTACTAATTGATCGCTTCAGGAACCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCTAAATTTTTTAATGAGAAATGCAAGATCAAAACAGTGTATTACCATGCTGGCTTGGCTGCCCGGCAGAGAGTAGCTGCTCAAAAGAAATGGCATGACGGGGAGGTCCATATTGTGTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCAGTTTGCATTGCCCTTTACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGTCAGGGATATAAAAAGGAAAGTTTTAAGAGGGCAATGGTTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATGAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTCGGGGAAGCTTTTGACAGAAAATCCTGCAAATATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGTATTATGA	1827	0.4406	MGSSSRKKEQDLELEKVRLISLALDFGFDESSANKCLHRLISLYGEDGRDFITVEHCGDDFLVTLAESMQATEDWDDLQEMESQACGTLTHVLDKTVAPGAHADNDHTSRSFINVVGDSPQLQKRKRRANVVELDSSDDEDMHCSVPRGKSVDYRSGITQGSVSSTSSKMQSSFASRDKSGTLTYEELQALDDIELANVVIFGNSTLRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGVPATFLNSQQTASQATAVLQELRKDKPSCKLLYLTPERIAGNQSFLEILKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPDVPVMALTATATHAVREDVLNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLIDRFRNQCGIVYCLSKSECVEVSKFFNEKCKIKTVYYHAGLAARQRVAAQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCMIRNGQGYKKESFKRAMVQAKKMQEYCEMKVECRRQTLLKHFGEAFDRKSCKYGSSPCDNCLKTVL*	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac7g03149	608	Gene3D	-	164	398	IPR027417	-
	Phac7g03149	608	CDD	DEXHc_RecQ	201	398	-	-
	Phac7g03149	608	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	416	566	IPR001650	-
	Phac7g03149	608	SMART	ultradead3	203	407	IPR014001	-
	Phac7g03149	608	NCBIfam	RecQ family ATP-dependent DNA helicase	201	606	IPR004589	GO:0004386\|GO:0006310
	Phac7g03149	608	FunFam	ATP-dependent DNA helicase	399	606	-	-
	Phac7g03149	608	FunFam	ATP-dependent DNA helicase	188	398	-	-
	Phac7g03149	608	Gene3D	-	399	607	IPR027417	-
	Phac7g03149	608	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	215	391	IPR014001	-
	Phac7g03149	608	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	330	339	IPR002464	-
	Phac7g03149	608	SMART	helicmild6	441	523	IPR001650	-
	Phac7g03149	608	Pfam	RecQ zinc-binding	535	604	IPR032284	-
	Phac7g03149	608	CDD	SF2_C_RecQ	399	532	-	-
	Phac7g03149	608	Pfam	Helicase conserved C-terminal domain	415	522	IPR001650	-
	Phac7g03149	608	Pfam	DEAD/DEAH box helicase	209	377	IPR011545	GO:0003676\|GO:0005524
	Phac7g03149	608	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	246	544	IPR027417	-
	Phac7g03149	608	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	189	604	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac7g03149	Phac-Chr7	34485718	34492178	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac7g03149	421	521	Eukaryotic Initiation Factors Gene Family	AT5G11170	30.693	1.05e-08	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac7g03149	K10899		-	gmx:100806070	1078.54