Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03130 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAGGGAGGTTCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGACGGCAGAGAGGTATCTGACTATTATTGTTCCTCCTTTGATGGATGTGCATCAGAGGAAAGTTTTGGGAGTATTTTGGGAGAGGAGGAGGAGGAATTTCAAACGGTGAGGAATTTCAATAGATCCAAGGCAAAAAAAGGCACTGCTAGTAGGCAGAAAAATGCCAGTAAAAACTCGCACAAGGGGGGAAGGATTAAATATGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAATACAAAGTGGAGGAGGAGGAGGAAATTCAAGAAGTGAGGAATTTAAATAGACCAAAGGCTAAAAATGGTGTATGCAGTAGGAAAAGAAGTGCAGGAAAAATCTCCCCAAAGAGGGGAAGGAAAATACACACAGAACAACTGGAAGAGGAGGAAGAGGTCAAACTGGAGGAGGAGGAAGAGAAGGAAAAGGTGAACGAAGGTGGAGATGATGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGATTATGTGGATGAGGATGATGAGTTTTTGCCTGAGGAAGAAGATTATTCAGATGAGGAAGAGGAAATGAGAGGGAGAAAGAAGAACAATGATAGCATGAAAATGGTCAAGAAGGTTTTTCAGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAGGTAGAAAAAGGCAGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAAGAAAAGAAGAAAGAATGCAAGGTCAAGGAAGAACGTAAGATGTGAAGATGATGATGAAGATGATTTTATAGATAATAGCCCAACCATGAGGACAAGTAGGAGAAAACGGGGCCAGAAGAGAAAAAGGGTGCTTATTTCAGATTCAGAAAACGCATTTTCTGGATCGTCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGCGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAACAACGAAGAGGTTGGTGTCCATGAGGAACAAATTCAGTTGCGGAAACCACCAGTTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGATGGGTAAGCAAGTGTGTGGGATTTGTCTATCCGAAGAGGATAAAAGAAGAGTTAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGGTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTTCTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTCGCTCTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGGTGACAATCCAGAACCTTCCTGTTAGACCACCCCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACATGATTTCGTCACCCCGTGCAGCTTTTAATCAAGGTTTTGTGCATCTTCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAAGGATCTTCTCCTGTATCTGGAGGAGCACCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAATTACTTTCAATAGATAGGATGACTTCTACCCCTGGCAGAACCACCAATGGTATTTCAGCTACCAGTTCAACTAGTAACTTATATAGCCCTCAAATTGATCAAAGTAGGGGAACCGCCACTCTTCAAGCAAGGACGCAGGATGTGGGAACATCATACCACACATTTTTTGATGACAGGTTATGCAACAATACCTCTCCACTAATGCAGAATGGACCATTATGGCCTGGACTTATGGGGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAGCATTGTTCCTGATGATAGCTTACCCTCTGCTGTCAGAGAAGAGACTAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAAAGCTTGTCTCAAAATATTGATTTAGGTCAGTAA 2376 0.4348 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGREVSDYYCSSFDGCASEESFGSILGEEEEEFQTVRNFNRSKAKKGTASRQKNASKNSHKGGRIKYVEEEEEEEEEEEEEEEEEEEEEEEEEEEYKVEEEEEIQEVRNLNRPKAKNGVCSRKRSAGKISPKRGRKIHTEQLEEEEEVKLEEEEEKEKVNEGGDDEEEEGDRDGEDEDFDYVDEDDEFLPEEEDYSDEEEEMRGRKKNNDSMKMVKKVFQKKRSSVVSTRGRKRQSSRASKKPLRKKRRKNARSRKNVRCEDDDEDDFIDNSPTMRTSRRKRGQKRKRVLISDSENAFSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHLINNEEVGVHEEQIQLRKPPVRKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRVTIQNLPVRPPPALHVRESIDLNMISSPRAAFNQGFVHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTSTPGRTTNGISATSSTSNLYSPQIDQSRGTATLQARTQDVGTSYHTFFDDRLCNNTSPLMQNGPLWPGLMGTPPVPDCEQVHQFSRSSIVPDDSLPSAVREETNFHTAKEQLQSMVKSHLKSLSQNIDLGQ* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03130 791 SMART ring_2 422 463 IPR001841 -
Phac7g03130 791 MobiDBLite consensus disorder prediction 152 167 - -
Phac7g03130 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 485 IPR013083 -
Phac7g03130 791 Pfam PHD-finger 514 560 IPR019787 -
Phac7g03130 791 CDD RING-HC_Topors 420 467 - -
Phac7g03130 791 MobiDBLite consensus disorder prediction 379 412 - -
Phac7g03130 791 Pfam Ring finger domain 421 464 IPR001841 -
Phac7g03130 791 ProSiteProfiles Zinc finger RING-type profile. 422 464 IPR001841 -
Phac7g03130 791 SMART PHD_3 514 559 IPR001965 -
Phac7g03130 791 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Phac7g03130 791 PANTHER F18C1.6 PROTEIN 174 791 - -
Phac7g03130 791 ProSiteProfiles Zinc finger PHD-type profile. 512 561 IPR019787 -
Phac7g03130 791 SUPERFAMILY RING/U-box 421 470 - -
Phac7g03130 791 MobiDBLite consensus disorder prediction 660 683 - -
Phac7g03130 791 SUPERFAMILY FYVE/PHD zinc finger 484 560 IPR011011 -
Phac7g03130 791 Coils Coil 344 364 - -
Phac7g03130 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 562 IPR013083 -
Phac7g03130 791 MobiDBLite consensus disorder prediction 63 324 - -
Phac7g03130 791 MobiDBLite consensus disorder prediction 1 37 - -
Phac7g03130 791 MobiDBLite consensus disorder prediction 261 289 - -
Phac7g03130 791 Coils Coil 99 145 - -
Phac7g03130 791 MobiDBLite consensus disorder prediction 104 136 - -
Phac7g03130 791 Coils Coil 170 197 - -
Phac7g03130 791 MobiDBLite consensus disorder prediction 180 233 - -
Phac7g03130 791 MobiDBLite consensus disorder prediction 234 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03130 Phac-Chr7 34436986 34440419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03130 509 558 C2H2 Transcription Factor Family AT3G01460 46.154 1.59e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac7g03130 PHD 3.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03130 - - vun:114191996 1268.45