Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03129 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAGGGAGGTTCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGACGGCAGAGAGGTATCTGACTATTATTGTTCCTCCTTTGATGGATGTGCATCAGAGGAAAGTTTTGGGAGTATTTTGGGAGAGGAGGAGGAGGAATTTCAAACGGTGAGGAATTTCAATAGATCCAAGGCAAAAAAAGGCACTGCTAGTAGGCAGAAAAATGCCAGTAAAAACTCGCACAAGGGGGGAAGGATTAAATATGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAATACAAAGTGGAGGAGGAGGAGGAAATTCAAGAAGTGAGGAATTTAAATAGACCAAAGGCTAAAAATGGTGTATGCAGTAGGAAAAGAAGTGCAGGAAAAATCTCCCCAAAGAGGGGAAGGAAAATACACACAGAACAACTGGAAGAGGAGGAAGAGGTCAAACTGGAGGAGGAGGAAGAGAAGGAAAAGGTGAACGAAGGTGGAGATGATGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGATTATGTGGATGAGGATGATGAGTTTTTGCCTGAGGAAGAAGATTATTCAGATGAGGAAGAGGAAATGAGAGGGAGAAAGAAGAACAATGATAGCATGAAAATGGTCAAGAAGGTTTTTCAGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAGGTAGAAAAAGGCAGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAAGAAAAGAAGAAAGAATGCAAGGTCAAGGAAGAACGTAAGATGTGAAGATGATGATGAAGATGATTTTATAGATAATAGCCCAACCATGAGGACAAGTAGGAGAAAACGGGGCCAGAAGAGAAAAAGGGTGCTTATTTCAGATTCAGAAAACGCATTTTCTGGATCGTCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGCGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAACAACGAAGAGGTTGGTGTCCATGAGGAACAAATTCAGTTGCGGAAACCACCAGTTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGATGGGTAAGCAAGTGTGTGGGATTTGTCTATCCGAAGAGGATAAAAGAAGAGTTAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGGTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTTCTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTCGCTCTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGGTGACAATCCAGAACCTTCCTGTTAGACCACCCCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACATGATTTCGTCACCCCGTGCAGCTTTTAATCAAGGTTTTGTGCATCTTCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAAGGATCTTCTCCTGTATCTGGAGGAGCACCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAATTACTTTCAATAGATAGGATGACTTCTACCCCTGGCAGAACCACCAATGGTATTTCAGCTACCAGTTCAACTAGTAACTTATATAGCCCTCAAATTGATCAAAGTAGGGGAACCGCCACTCTTCAAGCAAGGACGCAGGATGTGGGAACATCATACCACACATTTTTTGATGACAGGTTATGCAACAATACCTCTCCACTAATGCAGAATGGACCATTATGGCCTGGACTTATGGGGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAGCATTGTTCCTGATGATAGCTTACCCTCTGCTGTCAGAGAAGAGACTAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAAAGCTTGTCTCAAAATATTGATTTAGGCCACAGTACTTTCAAGGATATTGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGATCTTGAGCACAAGAACACTGAAGTTTGCAATGTGGCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGTTGGCGGGCCAACGAGTCTGATTAAAGGTTGCTGCTCATCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCGTCCCAATGGTTACGATTAGGTCTATAG 2625 0.4381 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGREVSDYYCSSFDGCASEESFGSILGEEEEEFQTVRNFNRSKAKKGTASRQKNASKNSHKGGRIKYVEEEEEEEEEEEEEEEEEEEEEEEEEEEYKVEEEEEIQEVRNLNRPKAKNGVCSRKRSAGKISPKRGRKIHTEQLEEEEEVKLEEEEEKEKVNEGGDDEEEEGDRDGEDEDFDYVDEDDEFLPEEEDYSDEEEEMRGRKKNNDSMKMVKKVFQKKRSSVVSTRGRKRQSSRASKKPLRKKRRKNARSRKNVRCEDDDEDDFIDNSPTMRTSRRKRGQKRKRVLISDSENAFSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHLINNEEVGVHEEQIQLRKPPVRKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRVTIQNLPVRPPPALHVRESIDLNMISSPRAAFNQGFVHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTSTPGRTTNGISATSSTSNLYSPQIDQSRGTATLQARTQDVGTSYHTFFDDRLCNNTSPLMQNGPLWPGLMGTPPVPDCEQVHQFSRSSIVPDDSLPSAVREETNFHTAKEQLQSMVKSHLKSLSQNIDLGHSTFKDIARSSMHTILAACDLEHKNTEVCNVAPPSACPHMELMVGGPTSLIKGCCSSCFDSFVGDVVKRVLDTRVSSQWLRLGL* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03129 874 SMART ring_2 422 463 IPR001841 -
Phac7g03129 874 MobiDBLite consensus disorder prediction 152 167 - -
Phac7g03129 874 CDD RING-HC_Topors 420 467 - -
Phac7g03129 874 MobiDBLite consensus disorder prediction 379 412 - -
Phac7g03129 874 ProSiteProfiles Zinc finger RING-type profile. 422 464 IPR001841 -
Phac7g03129 874 SMART PHD_3 514 559 IPR001965 -
Phac7g03129 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 485 IPR013083 -
Phac7g03129 874 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Phac7g03129 874 ProSiteProfiles Zinc finger PHD-type profile. 512 561 IPR019787 -
Phac7g03129 874 SUPERFAMILY RING/U-box 421 470 - -
Phac7g03129 874 Coils Coil 344 364 - -
Phac7g03129 874 MobiDBLite consensus disorder prediction 63 324 - -
Phac7g03129 874 MobiDBLite consensus disorder prediction 1 37 - -
Phac7g03129 874 PANTHER F18C1.6 PROTEIN 170 864 - -
Phac7g03129 874 MobiDBLite consensus disorder prediction 261 289 - -
Phac7g03129 874 Coils Coil 99 145 - -
Phac7g03129 874 MobiDBLite consensus disorder prediction 104 136 - -
Phac7g03129 874 Coils Coil 170 197 - -
Phac7g03129 874 Pfam Ring finger domain 421 464 IPR001841 -
Phac7g03129 874 SUPERFAMILY FYVE/PHD zinc finger 484 560 IPR011011 -
Phac7g03129 874 MobiDBLite consensus disorder prediction 180 233 - -
Phac7g03129 874 Pfam PHD-finger 514 560 IPR019787 -
Phac7g03129 874 MobiDBLite consensus disorder prediction 660 690 - -
Phac7g03129 874 MobiDBLite consensus disorder prediction 234 252 - -
Phac7g03129 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 562 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03129 Phac-Chr7 34436082 34440419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03129 509 558 C2H2 Transcription Factor Family AT3G01460 46.154 2.44e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac7g03129 PHD 4.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03129 - - vun:114191996 1436.78