Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03082 ATGGGAAGGAATGCGATGGATTGGAACGATACATGTTCGGACCAAGTAATTGCGGAAATGATTGAAATGGGTTTCGAGTATTCCAGCATCGTGGAAGCCATAAAAGTAGTGGGTCCATCTATTCCCAGCGCTGTGGAACACATTCTCAATTCTACTACTGGAGAAGCATCCACAACCCACATCTCCAATTCGGATGCAAGCAATGGGAATGCTCGCAAGAAACGACCTTTGCGCACATCCCGTTTAGTTCGACAGTCCAAGATATTCGACCATTTCCATTCCAATGATGATGTCAAAGAACACAAGGAGGATCTCCCTCAATTGGGAATTGATCCCAATCCCATTGTGCTTTCAGAGCCTTTTGAAGCGCCATATTTGGATGTTCAATCTGATTGGGAGCAGAAAATTAGCAATCTGATGAAAAAGCATTTTGGTTTTTCATCCTTGAAGAGTTTTCAGAAGGAAGCCATCTCTGCCTGGGTTGCTCATAAAGATTGTCTTGTCCTCGCTGCAACAGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTGTCTGGGAAAGTCGTGGTTGTGATTTCGCCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTAACTAGACATGGTATCAGTGCGTGCTTTCTTGGCTCTGGGCAACCAGATAATACCGTTGAACAGAAAGCGATGAGAGGATTGTATAGTACAGTGTATATCTGCCCAGAGACTGTTCTAAGATTGATTCAACCACTGCAGACGCTTGCAGAAAGTCGTGGTATCGCTTTATTTGCAATTGATGAGGTACACTGTGTTTCAAAATGGGGTCATGATTTTCGTCCAGATTACAGGCGACTGTCTGTACTGAGAGAAAATTTCAGTACTAGCAAGCTAAAATCCCTAAAATTTGATATACCTCTGATGGCCTTAACAGCTACAGCCACAAAAAGAGTTCGAGAAGACATTTTAAAATCATTGCACATGTCAAAAGAAACGAAAGTTTTTCTTACATCATTTTTTCGATCAAATTTACGCTTCATGGTAAAGCATAGTCGAGCATCACAGGCTTCTTATGCAAAAGATTTTCATGAATTGATTCATGTATATGGTAGTAAGAAAAATATTGATGAAAATGAAAAGGTTTTCATCTCAGATGATTCAGATCAGCTTTCTAATAGCTCCAATGCTAGTAGTATCTCTGATACAGACAGTGTTTCACCTGATGACATGGATGACAACCAAGATGATTATGCTTATAGAGATGTTAATATAATGCACGCAGGAAACACAGATGATTTTTTAACGGGAAAAGAATTGTCAATTGAGTTCCTGGAAAATGATATCAATACCTTTCAAAGTGTTGATAACTTAGATGTTACCCATGGTGACTTTTGTGTTCTACCTCACAAGGAATTGGAATTATCCGAGACAACTGACCTACCTAAGAAACCAGAAGGAAGAGTAAAAATTCTGAAAGAACCTTTGGAACAAGGACCAACAATCATTTATGTGCCCACCAGAAAAGCAACTCTGAGAATTGCGAAGTACCTATGCAAGTTTGGTGTGAAGGCAGCTGCTTATAATGCAGGGCTCACCAAATTGCATCTAAGAAAGGTTCATAAAGAGTTTCATGAAAATAATTTACAGGTTGTTGTTGCTACAATAGCTTTTGGAATGGGTATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAATCATACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGTATTCTGTATGCAAACCTAGCAAGCAAGCCATCACTTTTGCCTAGTCGAAAAAGTGAAGCTCAGAAAAAACAAGCATATATTATGTTGTCTGATTGTTTCAGGTTTGCTTTGATAAATACACCTGTGTCTTTTTCATTTTTATTATTTAGTACAGAACCTTAA 1956 0.3952 MGRNAMDWNDTCSDQVIAEMIEMGFEYSSIVEAIKVVGPSIPSAVEHILNSTTGEASTTHISNSDASNGNARKKRPLRTSRLVRQSKIFDHFHSNDDVKEHKEDLPQLGIDPNPIVLSEPFEAPYLDVQSDWEQKISNLMKKHFGFSSLKSFQKEAISAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTRHGISACFLGSGQPDNTVEQKAMRGLYSTVYICPETVLRLIQPLQTLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLHMSKETKVFLTSFFRSNLRFMVKHSRASQASYAKDFHELIHVYGSKKNIDENEKVFISDDSDQLSNSSNASSISDTDSVSPDDMDDNQDDYAYRDVNIMHAGNTDDFLTGKELSIEFLENDINTFQSVDNLDVTHGDFCVLPHKELELSETTDLPKKPEGRVKILKEPLEQGPTIIYVPTRKATLRIAKYLCKFGVKAAAYNAGLTKLHLRKVHKEFHENNLQVVVATIAFGMGIDKSNVRRIIHYGWPQSLESYYQEAGRAGRDGKLADCILYANLASKPSLLPSRKSEAQKKQAYIMLSDCFRFALINTPVSFSFLLFSTEP* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03082 651 SMART ultradead3 145 350 IPR014001 -
Phac7g03082 651 FunFam ATP-dependent DNA helicase 474 602 - -
Phac7g03082 651 Pfam Helicase conserved C-terminal domain 489 592 IPR001650 -
Phac7g03082 651 FunFam ATP-dependent DNA helicase 118 341 - -
Phac7g03082 651 Gene3D - 476 638 IPR027417 -
Phac7g03082 651 Gene3D - 119 341 IPR027417 -
Phac7g03082 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 604 IPR027417 -
Phac7g03082 651 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 646 IPR001650 -
Phac7g03082 651 SMART helicmild6 512 593 IPR001650 -
Phac7g03082 651 MobiDBLite consensus disorder prediction 387 405 - -
Phac7g03082 651 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 333 IPR014001 -
Phac7g03082 651 Pfam DEAD/DEAH box helicase 152 320 IPR011545 GO:0003676|GO:0005524
Phac7g03082 651 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 11 51 IPR015940 -
Phac7g03082 651 PANTHER DNA HELICASE RECQ FAMILY MEMBER 129 631 - -
Phac7g03082 651 MobiDBLite consensus disorder prediction 53 77 - -
Phac7g03082 651 NCBIfam RecQ family ATP-dependent DNA helicase 139 368 IPR004589 GO:0004386|GO:0006310
Phac7g03082 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 203 IPR027417 -
Phac7g03082 651 MobiDBLite consensus disorder prediction 387 414 - -
Phac7g03082 651 CDD DEXHc_RecQ 140 340 - -
Phac7g03082 651 MobiDBLite consensus disorder prediction 53 70 - -
Phac7g03082 651 SUPERFAMILY UBA-like 12 51 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03082 Phac-Chr7 34053143 34060027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03082 492 611 Eukaryotic Initiation Factors Gene Family AT5G11170 27.500 1.93e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03082 K10900 - gmx:100793222 979.933