Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03076 ATGGCGGAAACTAAGTTAAGCATTGGCGAAGAAGAAGAGAAAAAAGAAGCAGAGGACCAAAGCTTCGAAGAGCTCGGCGTGGACGCTCGTCTCCTTCGCGCCTTACAAAAGAAAGGGATTGCGAAACCCACTCCAATCCAGGGCGTCGCCATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCTGGAAAGACCTTAGCATATCTTCTCCCGTTGCTTCAGAAGCTTTTTACCGTTAGGGCTGATCGGAAGAAGTTGGCGCCCAATGCTTTTGTTCTTGTCCCTACTCGCGAACTCAGTCAACAGGTGTATGCGGAAGTGTTGTCGCTGGTTGAGTTATGCAGAGTTAAACTAAAAGTTGTGCAGCTGAATAGCAACATGCTTGCCAATGACTTGCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTACTTGCGTAGCAAAGTGTTTGTCCGGTGGCATACTTAAGGCGGAATCTATTAGTGAATCGCTTGAAACTCTTGTTCTTGATGAGGCAGATCTTCTACTGTCATATGGGTATGAAAAGGATATAAAAGCTTTTACACCTCATGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCGGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCATTTATTTTGACTTTGCCTGAAGTGGGAAATAACAAGGAAGAGATCATTCCTAAAAATGTTCAGCAGTTCTGGATTTCATGTTCTGCCAGTGATAAGTTACTTTACATCCTTGCTGTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACTAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTCCATATTCTGGAGGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGTCAGTCAAAGGAAAAAGATGAACAGTCTAAGGAAAGTAATGCTGTATCACGGAAGTCTAGAAAACGTGCTAAATTAGATTCTGAATTCGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCATAGTGTAGAGGGATATGTACATCGAATTGGACGTACAGGTAGAGCGTACAATTCTGGTGCTTCTGTCTCTCTGGTTTCTCCAGATGAGATGTATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAAAACAAAGGCACAAGTTCTATTGCTGAGTTTCCCCTCCTCACCAAGAACGCAGTTGAATCTTTACGGTATAGGGCAGAGGATGTTGCCAAGAGTGTAACTAGAATTGCCGTCCGAGAGTCACGAGCCCAAGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCATTTTGAGACTAATCCAAGAGACCTAGATCTACTGAAGCATGACAAAATTTTGAGCAAGAATGAGCCACCTCCGCACCTACGTGATGTGCCTGACTACCTATTAGACAAACCAACGAAAGAGGCAAGGGAAATGGTTAAACTTGCAAGGGATGCAATGGGAAATAATAATAATCGCCGCAAAGGACCCAAGAGAAAATTAAGAAAAGATGGAGACCCTTTGAAGGCTTTGGCATCAAAAAGACCGCACAAAGTTAGGAAGACTGGTGGAAGCGATGGCAACAATAGCAGTGATAGACAAAAACGCAAAAAGAATAAGGGTATTTAA 1785 0.4235 MAETKLSIGEEEEKKEAEDQSFEELGVDARLLRALQKKGIAKPTPIQGVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTVRADRKKLAPNAFVLVPTRELSQQVYAEVLSLVELCRVKLKVVQLNSNMLANDLRAALAGPPDILISTPTCVAKCLSGGILKAESISESLETLVLDEADLLLSYGYEKDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNNKEEIIPKNVQQFWISCSASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEQSKESNAVSRKSRKRAKLDSEFGVVRGIDFKNVFTVINFEMPHSVEGYVHRIGRTGRAYNSGASVSLVSPDEMYTLEEIRSFVGDDENKGTSSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKILSKNEPPPHLRDVPDYLLDKPTKEAREMVKLARDAMGNNNNRRKGPKRKLRKDGDPLKALASKRPHKVRKTGGSDGNNSSDRQKRKKNKGI* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03076 594 Gene3D - 236 440 IPR027417 -
Phac7g03076 594 Coils Coil 471 491 - -
Phac7g03076 594 CDD DEADc_DDX56 27 234 - -
Phac7g03076 594 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 232 IPR014001 -
Phac7g03076 594 PANTHER RNA HELICASE 10 528 - -
Phac7g03076 594 CDD SF2_C_DEAD 249 410 - -
Phac7g03076 594 SMART helicmild6 289 401 IPR001650 -
Phac7g03076 594 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 20 48 IPR014014 GO:0003724
Phac7g03076 594 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 267 447 IPR001650 -
Phac7g03076 594 MobiDBLite consensus disorder prediction 1 21 - -
Phac7g03076 594 MobiDBLite consensus disorder prediction 535 594 - -
Phac7g03076 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 233 IPR027417 -
Phac7g03076 594 Pfam Helicase conserved C-terminal domain 260 401 IPR001650 -
Phac7g03076 594 SMART ultradead3 39 252 IPR014001 -
Phac7g03076 594 Gene3D - 1 234 IPR027417 -
Phac7g03076 594 Pfam DEAD/DEAH box helicase 44 221 IPR011545 GO:0003676|GO:0005524
Phac7g03076 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 426 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03076 Phac-Chr7 34035113 34042934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03076 9 441 Eukaryotic Initiation Factors Gene Family AT3G13920 27.563 6.32e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03076 K14810 - gmx:100800749 990.334