LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac7g03065	ATGGCGGAAACCAAGTTGAAAGAAAGCATTGGCGAAGAAGAAGATAAAAAAGAAACAGAGGACCAAAGCTTCGAAGAGCTCGGCGTGGACGCTCGTCTCCTTCGCGCTTTACACAAGAAAGGGATTGCGAAACCCACTCCAATTCAGGGCGTCGCCATTCCACTCATTCTGGAAGGCAAGGACGTGGTTGCACGCGCCAAAACAGGTTCTGGAAAGACCTTAGCATATCTTCTCCCGTTGCTTCAGAAACTTTTTACCGTTAGGGCTGATCGGAAGAAGTTGGCGCCCAATGCTTTTGTTCTTGTCCCTACTCGCGAACTCAGTCAACAGGTGTATGCGGAAGTGTTGTCGCTGGTTGAGCTGTGCAGAGTTAAACTAAAAGTTGTGCAGCTGAATAGCAACATGCTTGCCAATGACTTGCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTACTTGCGTAGCGAAGTGTTTGTCCGGTGGCATACTTAAGGCGGAATCCATTAGCGAATCGCTTGAAACTCTTGTTCTTGATGAGGCAGATCTTCTACTGTCATATGGGTATGAAAAGGATATAAAAGCTTTTACACCTCATGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCGGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCATTTATTCTGACTTTGCCTGAAGTGGGAAATAACAAGGAAGAGATCATTCCTAAAAATGTTCAGCAGTTCTGGATTTCATGTTCTGCCAGTGATAAGTTACTTTACATCCTTGCTGTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTCCTGATATTCACTAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTCCATATTCTGGAGGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGTCAGTCAAAGGAAAAAGATGAACTGTCTAAGGAAAGTAATGCTGTATCACGGAAGTCTAGAAAACGTGCTAAATTAGATTCTGAATTCGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATTCACGGTTATAAACTTTGATATGCCTCATAGTGTTGAGGGATATGTACATCGAATTGGACGTACAGGTAGAGCGTACAATTCTGGTGCTTCTGTCTCTCTGGTTTCTCCAGATGAGATGTATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAAAACAAAGGCACAAGTTCTATTGCTGAGTTTCCCCTCCTCACCAAGAACGCAGTTGAATCTTTACGGTATAGGGCAGAGGATGTTGCCAAGAGTGTAACTAGAATTGCCGTCCGAGAGTCACGAGCCCAAGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCATTTTGAGACTAATCCAAGAGACCTAGATCTACTGAAGCATGACAAAATTTTGAGCAAGAATGAGCCACCTCCGCACCTACGTGATGTGCCTGACTACCTATTAGACAAACCAACGAAAGAGGCAAGGGAAATGGTTAAACTTGCAAGGGATGCAATGGGAAATAATAATAATCGCCGCAAAGGACCCAAGAGAAAATTAAGAAAAGATGGAGACCCTTTGAAGGCTTTGACATCAAAAAGACTGCACAAAGTTAGGAAGACTGGTGGAAGCGATGGCAACAATAGCAGTGATAGACATAAACGCAAAAAGAATAAGGGTATTTAA	1791	0.4249	MAETKLKESIGEEEDKKETEDQSFEELGVDARLLRALHKKGIAKPTPIQGVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTVRADRKKLAPNAFVLVPTRELSQQVYAEVLSLVELCRVKLKVVQLNSNMLANDLRAALAGPPDILISTPTCVAKCLSGGILKAESISESLETLVLDEADLLLSYGYEKDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNNKEEIIPKNVQQFWISCSASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDELSKESNAVSRKSRKRAKLDSEFGVVRGIDFKNVFTVINFDMPHSVEGYVHRIGRTGRAYNSGASVSLVSPDEMYTLEEIRSFVGDDENKGTSSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKILSKNEPPPHLRDVPDYLLDKPTKEAREMVKLARDAMGNNNNRRKGPKRKLRKDGDPLKALTSKRLHKVRKTGGSDGNNSSDRHKRKKNKGI*	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac7g03065	596	MobiDBLite	consensus disorder prediction	537	596	-	-
	Phac7g03065	596	SMART	helicmild6	291	403	IPR001650	-
	Phac7g03065	596	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	269	449	IPR001650	-
	Phac7g03065	596	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	246	428	IPR027417	-
	Phac7g03065	596	PANTHER	RNA HELICASE	12	525	-	-
	Phac7g03065	596	Coils	Coil	473	493	-	-
	Phac7g03065	596	CDD	DEADc_DDX56	29	236	-	-
	Phac7g03065	596	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	53	234	IPR014001	-
	Phac7g03065	596	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	22	50	IPR014014	GO:0003724
	Phac7g03065	596	CDD	SF2_C_DEAD	251	412	-	-
	Phac7g03065	596	Pfam	DEAD/DEAH box helicase	46	223	IPR011545	GO:0003676\|GO:0005524
	Phac7g03065	596	Gene3D	-	1	236	IPR027417	-
	Phac7g03065	596	MobiDBLite	consensus disorder prediction	1	23	-	-
	Phac7g03065	596	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	13	235	IPR027417	-
	Phac7g03065	596	MobiDBLite	consensus disorder prediction	555	587	-	-
	Phac7g03065	596	Pfam	Helicase conserved C-terminal domain	262	403	IPR001650	-
	Phac7g03065	596	Gene3D	-	238	442	IPR027417	-
	Phac7g03065	596	SMART	ultradead3	41	254	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac7g03065	Phac-Chr7	33929957	33938578	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac7g03065	3	443	Eukaryotic Initiation Factors Gene Family	AT3G13920	27.902	2.34e-37	142

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac7g03065	K14810		-	gmx:100800749	992.645