Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03025 ATGAAGCTTCTCCTCCCCTTCATTACGAACAACAACCAGCCATTTATAAGCGCTTCCTCTTTTCCTTCACTTTATGAAATCTTCTCTCTCTCTCAAAAGCTTCACCTTCCTTCCTCTAGAATGAGCCAAATGAAGAACACAAATGGCTCTAATAAAAATGGAGGAATTTACTTTTTTCTCCTCCTCCTCATCGTTCCTCTTGCGGCTGCACAATCTGCTGACAATAACCAGAACACATCGTATTACAACCGCTTCAGCCCTTCCATGGCCATCATAATCGTCATTCTCATCGCTGCGGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCCGACTCCCCCTCCGCCAGCATCCGCAACCTCACCGGAGCCGCCGCCCGCCCGCGCCGCGGCCTCGACCAGGCGGTCATCGACGCTTTCCCCACGCTGGAGTACTCCGTGGTGAAGATCCACAAGCTCGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGACACCGAAACTTTGCGTTTGATCCCCAAGTGCGATCACGTGTTCCACCCGGAGTGCATCGACGAGTGGCTCGCCTCCCACACCACCTGCCCCGTCTGCCGGGCCAACCTCGTCCCTGAGCCCGGAGACTCCGTCAGAGGAATTCCAGTTCTCAACGCTCCTTATGACATCGAGGCCCAATCCGAAGCCCAACCCGAGGCCCACAACGACGCCGTCGAGCCTTTTCCCGAACAACAGCAAGAGCCTAAACTTCCAATCTCCTCCGAACCCCCTCAAGTAGTCAGCCTAAACCAGACGCTCAACCGGAACCGCACCAGAGGCTCTCGCTCGGGCCGCCCCCGCCGGTTCCCGCGCTCTCACTCGACCGGTCATTCGCTGGTCCAGCCCGGCGAGGACACTGAACGGTTCACCTTGAGGCTCCCCGAGGAAGTTAGAAAACAGATACTTCTCAACCCGGAACTGCATCGAGCGAGAAGCTTGGTTATGTTGCCCAGGCAAGGTAGTTCGCGGCGTGGATATCGAACCGGCGAGGGAAGTAGCAGAGGGAGGTCTTCGAGGCGGTTGGACCGGGGGTTTAAGTCCGACCGCTGGGTTTTCACTATGGCGCCGCCATTCTTAGTGAGGGCCTCTTCTGTTAGGTCGCCAAGGGTGGCCAACAATGGCGGCGCAGGAACATCTGCTTCTACTCCCTTTCCGCCGCCGGCTGCTGTGGAATCTGTTTGA 1236 0.5696 MKLLLPFITNNNQPFISASSFPSLYEIFSLSQKLHLPSSRMSQMKNTNGSNKNGGIYFFLLLLIVPLAAAQSADNNQNTSYYNRFSPSMAIIIVILIAAVFLMGFFSIYIRHCADSPSASIRNLTGAAARPRRGLDQAVIDAFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGIPVLNAPYDIEAQSEAQPEAHNDAVEPFPEQQQEPKLPISSEPPQVVSLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPEEVRKQILLNPELHRARSLVMLPRQGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSVRSPRVANNGGAGTSASTPFPPPAAVESV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03025 411 MobiDBLite consensus disorder prediction 233 305 - -
Phac7g03025 411 MobiDBLite consensus disorder prediction 252 277 - -
Phac7g03025 411 PANTHER RING FINGER DOMAIN-CONTAINING 72 214 - -
Phac7g03025 411 FunFam E3 ubiquitin-protein ligase ATL6 123 211 - -
Phac7g03025 411 MobiDBLite consensus disorder prediction 384 398 - -
Phac7g03025 411 MobiDBLite consensus disorder prediction 334 359 - -
Phac7g03025 411 MobiDBLite consensus disorder prediction 380 411 - -
Phac7g03025 411 SMART ring_2 163 204 IPR001841 -
Phac7g03025 411 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Phac7g03025 411 Pfam Ring finger domain 162 205 IPR001841 -
Phac7g03025 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 210 IPR013083 -
Phac7g03025 411 SUPERFAMILY RING/U-box 156 211 - -
Phac7g03025 411 CDD RING-H2_EL5-like 162 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03025 Phac-Chr7 33711347 33713492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03025 56 398 Rapid Response to Elicitors AT3G05200 47.863 4.36e-95 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03025 K10664 - gmx:100810865 531.176