LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac7g02986	ATGGGGTGTGTGATTGGGAGAGAAGTGTCATCGGGAATAATCTCCGAGGCGAAGGAGGAGAAGAGTGTGAGTGTTGAATCCAACAACAACAAGAAAGTTGATGATGTGTCCTCAAGCAGAGCTGAGGAGAACGTGGTAGAGGCTCTGAATGGTGAGAAGGAGAAGGAGAAGGAGAAAGAGAAGGGAAGGGAAGGGAGTGGTGCTGCCGATGGAGTCCGGGGGCCAAAAGGTGACAGAAGAAGATCAAAGCCAAATCCAAGGCTAAGTAATCCACCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGTGAAGCCCTTAGCGGGTGGATTCCGCGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACTTTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATAAAATTTACAGAGCCCCAGGTTAAATGTTACACGCATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACATACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTAACCATGAAGGGATACTTAAAATTGCTGACTTCGGCCTTGCGTCTTTCTTTGATCCAAACTGCAGGCACCCCATGACTAATCGTGTAGTTACCCTTTGGTACCGCCCTCTTGAGTTACTTCTTGGTGCCACAGAATATGGTGTGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTATTCTTCCTGGACGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGATCACCTTCTGATGAGTACTGGAAGAAGTCAAAGATGCCTAATGCTACCTTGTTTAAACCTCGAGAGCCATACAAGAGGTGTATAAAAGAGACATTTAAAGATTTTCCACCTTCAGCTCTGCCCCTTATCGAGACTCTTCTTGCAATTGATCCAGCAGAACGAAAGTCTGCCTCAGAAGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCCTGTGATCCTCTTAGTCTTCCAAAATATCCCCCAACAAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATCAAGAGCTGCAGGCAAAGCTCATGTTGATGGTGCAAAGAAGCATCGGTTGCGTGATCGCACTGCCAAAGCTGCTCCTGCTCCAGAAGCCAATGCTGAGCTTCAATCCAACGTTGATAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCTCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCTAATCACATTGATCCAGATATTGTTCCTTCTGACATCTCTTTGGGTTCAACCTCATACACCTTTTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATCCTGCCAGCATTAGTAAGCGGAAGAAACAAACTGCAGGTGATGCATTGGATTTGTCAAAACAATATAAGGGAACCCTCAAGGATAAAGTTAAAGGAAAGAAAATCACAGCCTAG	1764	0.4439	MGCVIGREVSSGIISEAKEEKSVSVESNNNKKVDDVSSSRAEENVVEALNGEKEKEKEKEKGREGSGAADGVRGPKGDRRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYTHQLLSGLEHCHSRNILHRDIKGSNLLINHEGILKIADFGLASFFDPNCRHPMTNRVVTLWYRPLELLLGATEYGVAIDLWSVGCILGELLAGKPILPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPREPYKRCIKETFKDFPPSALPLIETLLAIDPAERKSASEALRSEFFTTEPYACDPLSLPKYPPTKEMDAKRRDDEARRSRAAGKAHVDGAKKHRLRDRTAKAAPAPEANAELQSNVDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPSDISLGSTSYTFSKEPFQAWSGPIGNPASISKRKKQTAGDALDLSKQYKGTLKDKVKGKKITA*	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac7g02986	587	MobiDBLite	consensus disorder prediction	540	566	-	-
	Phac7g02986	587	Coils	Coil	39	59	-	-
	Phac7g02986	587	Gene3D	Transferase(Phosphotransferase) domain 1	210	451	-	-
	Phac7g02986	587	FunFam	probable serine/threonine-protein kinase At1g54610	210	451	-	-
	Phac7g02986	587	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	247	259	IPR008271	GO:0004672\|GO:0006468
	Phac7g02986	587	MobiDBLite	consensus disorder prediction	1	99	-	-
	Phac7g02986	587	ProSitePatterns	Protein kinases ATP-binding region signature.	133	156	IPR017441	GO:0005524
	Phac7g02986	587	Pfam	Protein kinase domain	127	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac7g02986	587	MobiDBLite	consensus disorder prediction	422	484	-	-
	Phac7g02986	587	Gene3D	Phosphorylase Kinase; domain 1	114	209	-	-
	Phac7g02986	587	PANTHER	CELL DIVISION PROTEIN KINASE	125	415	-	-
	Phac7g02986	587	SUPERFAMILY	Protein kinase-like (PK-like)	122	417	IPR011009	-
	Phac7g02986	587	MobiDBLite	consensus disorder prediction	429	466	-	-
	Phac7g02986	587	CDD	STKc_CDK9_like	127	411	-	-
	Phac7g02986	587	MobiDBLite	consensus disorder prediction	13	85	-	-
	Phac7g02986	587	ProSiteProfiles	Protein kinase domain profile.	127	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac7g02986	587	FunFam	probable serine/threonine-protein kinase At1g54610	114	209	-	-
	Phac7g02986	587	SMART	serkin_6	127	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac7g02986	Phac-Chr7	33467009	33473955	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac7g02986	119	449	Core Cell Cycle Gene Families	AT5G10270	52.450	7.13e-118	357

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Phac7g02986		Pkinase	6.2e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac7g02986	K08819		-	gmx:100817289	1024.23