Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02876 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGCGTAAAGTCTGCCAATCCAGAAGACATTGAACGCGACGTTTTGGAAAAGGCTACAAAGAATGATTCAGTGACCGTTACTGAAGGTGAAGGTAGTGCCAAGGAAGAACGTTCTGATTTAACTGAAAATGTCGATCCATCGGCTAATGCTAGAGCTGAACTTCATCAGAAGCTGAGAGCTGTTCAATTTGAAATTGATGCGGTTGCCTCCACCGTTGAGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTTGTGATGCTGGTGAAGACGGCTTAGTGCCAGGGACTGCTGAGGGTGATTCCTCCAACAATGCAAACCTTCAATGTGTTCTTGCTGCCGATAGGTTGAGGAGTCTGAAGAAGACGAAAGCTCAACTAGAGAAAAATCTTTTTAATTTGTCCAAGGATGATGCTTCCAAAAGTGTTGAGGATGAACAATTGATCTTAAGTTTAGTTAGGGAAGAACGGAAGCCCAAGAGGAAGGTTGAAGAAGATAAAAAATTAGACAAAAGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGATGATGATGTTGATTTTGATACTGTTCTAGATGCAGCCTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGGAAAGGAATTTTAACCCCTTTTCACAAGTTAAAGGGCTTTGAGCGCCGTTTTCATCAACTAGAAACATCAACTAGTCATAATGCTGACGAGGAAGAAACTGATGGTGATCTTGCTGCTGCCAGTGTTGAAAGAGCTGCCAAATCCATGTATGAGGCCGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCCCCGAAGCTTGATGCACCCACTTTTCCATTTCGAAGGCTCAAGAAACCGCTACAATCTTCCAAACCTCTAGATAGAGAGGTGGAGCTAAATAAAGATTCGAAAAGGAAAAAGAGGAGACCCGCGCCTGGTAGGAAGTGGACCAAGCGTGTTTCTTGTGAGGATACACGTCTGGAAGAAAGTGAAAACGCAGATGGTTGCTTGGATACTTCCAGTTTTGAAAATTTAGAAGAACAAGACATTGAATTTGATGATCATGAATCTTCGTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAAGATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGGTCTTATCGTTTCTTGGTGCATTGCACTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCATGTAGAGATTTTACACGATTCGGCTCACGATTGTTCTCCTAGAAAGAAGCAAGCTAAATCCGAAGAAACAGACTGTGAAAGCAATAGTTCAAGTGACAATGATTATGAGAAAAATGTCCCATCTAGAAACACAAAAAAATGGGAATCCCTGATAAATCGTGTCATGAGGTCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTTGTTTGCAAGCAGCTACAAACTGTACATCGTATCATAATGACTGGTGCACCTATTCAGAATAAGCTGAGTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTATATTTGAAGTTGAATTTGCAGTTCCTATATCAGTTGGCGGATATGCAAATGCTTCACCTTTGCAAGTATCCACGGCATACAGGTGTGCTGTGGTGCTACGTGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAATATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTACGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGGGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACAACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCCTTAATGGACGAATTTAATGCCTCAAGTGAAATATTTATTTTCATTTTAACGACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAACTGATATGCAGGCCAGAGAGCGAGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATAACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACGAATAAGATATTGAAGAATCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCATACTTAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAATATTTTTAGTCAAATATCTGAAGAAATAAATGTCATTGGGACACAGAAAGAAAATAAGGATGAGTATGAACATAGCCAAACTGCCAAACTGGATTCTGAAGATGTTGCAGTTAGTAATGATGACAAGTCAGAGGGAGGATCTTTGGAGAGAAAGGGGAAAGAGAAGGTTGAACCTAAGAATGGGATTGATGAAGAAACAAATATTTTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGACGAGCAAGCATCCCAGGTTGCACGAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATTCTCAGAAGCCATGATAGTGTATCTGTTCCCACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTACGAATCCCCTATTGGTAAATAAAAGCAAGGTATCTGACGAACTACCCAGCAAGGGAACTGCGAAGTTAAATGGATTCGCTGCTGGGGCATCTGCCGGTAAAGCATTATCTTCTGTCGAACTATTAGCTAAAATTAGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTTGAACATCAGTCTGGTACGTTTTCAAGTTCCTCGAATCAAGCAAGATCTATAGATGTTAGATCCTCCAGGGCTACTTCAACTTCATCTGGATTACAACCTGAAGTATTGATTCGGAAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATAGTTCAGCACTTCAGGAAACTTATTCCCTCAGAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCCCATTGGGTTCTGAAACCAGACTATCAATTCTGA 3678 0.4195 MEEEEDRILLSSLGVKSANPEDIERDVLEKATKNDSVTVTEGEGSAKEERSDLTENVDPSANARAELHQKLRAVQFEIDAVASTVERLRNVENNEECCDAGEDGLVPGTAEGDSSNNANLQCVLAADRLRSLKKTKAQLEKNLFNLSKDDASKSVEDEQLILSLVREERKPKRKVEEDKKLDKSKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFHQLETSTSHNADEEETDGDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLKKPLQSSKPLDREVELNKDSKRKKRRPAPGRKWTKRVSCEDTRLEESENADGCLDTSSFENLEEQDIEFDDHESSYVTLEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREANKWYPKFHVEILHDSAHDCSPRKKQAKSEETDCESNSSSDNDYEKNVPSRNTKKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPIFEVEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQISAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALMDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFILNVDGETGSTETSNIFSQISEEINVIGTQKENKDEYEHSQTAKLDSEDVAVSNDDKSEGGSLERKGKEKVEPKNGIDEETNILKSLFDANGIHSAMNHDLIMNAHDEEKMRLDEQASQVARRAAEALRQSRILRSHDSVSVPTWTGRSGTAGAPSSVRRKFGSTTNPLLVNKSKVSDELPSKGTAKLNGFAAGASAGKALSSVELLAKIRGNQEKAIGAGLEHQSGTFSSSSNQARSIDVRSSRATSTSSGLQPEVLIRKICTFIQQRGGSSDSASIVQHFRKLIPSEDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02876 1225 SMART helicmild6 768 851 IPR001650 -
Phac7g02876 1225 FunFam Protein CHROMATIN REMODELING 8 372 654 - -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 953 979 - -
Phac7g02876 1225 CDD SF2_C_SNF 737 862 - -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 273 336 - -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 1126 1151 - -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 1128 1151 - -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 1 58 - -
Phac7g02876 1225 SMART ultradead3 390 622 IPR014001 -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 481 509 - -
Phac7g02876 1225 Gene3D - 661 961 IPR027417 -
Phac7g02876 1225 PANTHER SNF2/RAD54 FAMILY MEMBER 159 1207 - -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 481 495 - -
Phac7g02876 1225 CDD CSB_WHD 1158 1224 - -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 1045 1068 - -
Phac7g02876 1225 MobiDBLite consensus disorder prediction 305 323 - -
Phac7g02876 1225 Pfam SNF2-related domain 397 719 IPR000330 GO:0005524|GO:0140658
Phac7g02876 1225 CDD DEXHc_ERCC6 394 604 - -
Phac7g02876 1225 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 406 605 IPR014001 -
Phac7g02876 1225 Pfam Helicase conserved C-terminal domain 744 851 IPR001650 -
Phac7g02876 1225 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 742 901 IPR001650 -
Phac7g02876 1225 FunFam DNA excision repair protein ERCC-6 662 940 - -
Phac7g02876 1225 Gene3D - 363 654 IPR038718 -
Phac7g02876 1225 Coils Coil 122 149 - -
Phac7g02876 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 655 IPR027417 -
Phac7g02876 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 914 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02876 Phac-Chr7 32585889 32592955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02876 366 904 RAD5 or RAD16-like Gene Family AT1G02670 22.259 5.02e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g02876 SNF2_N 7.1e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02876 K10841 - gmx:100820025 2086.61