Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02843 ATGGCACTGAACAAGAACCACTCCTACAACAACAAGCTTGGATATGAAGCTCTCCCACCCATCAAAGCCCAGGCTGAAACACTCCAACACCCCCCACAACCTGCTTCATCAGACTATGCTTTTCCCATATTTGTTATTGTTGTGCTCAGTGTCTTGGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAGATACTGCTCAAACTGGCGTCAAGTTAACCCAATGAGATGGATTTCCCTCCTGCGAATGCGACACAATGAGGATCCCTTCATAGCATTTTCTCCTGCTATGTGGAACCGAGGGCTTGATGAATCTGTCATCAGAGAAATCCCAACGTTTCAGTTCATAAAAGGAGAAGGTGAGGACCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAACTGCAACCATGCCTTTCATTTGGACTGCATTGATGTGTGGCTTCAGGCCAATTCCAATTGCCCGCTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGCAGTGATGAAGATTTTGTGGTTATTGAACTAGGGGGAGAGCCTGGAGCAGTGCTTCCACAGGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATCGAAACCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGTCACCATGTTTCCATCATGGGTGATGAGTGTATTGATATCAGAAAAAAAGATGACCAGTTTTTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATAATACAACAAAACAGGCATCAGAATGAGGCTAGTGCAAGTGAGTATTGTAACAGCAGATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAAGTCAGTTCTTCCTTTGGAAAATGATGTTTAG 1035 0.4386 MALNKNHSYNNKLGYEALPPIKAQAETLQHPPQPASSDYAFPIFVIVVLSVLATVLLLLSYFTFLTRYCSNWRQVNPMRWISLLRMRHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKGEGEDQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDVWLQANSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQQERNDSRGSLAHRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFFIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEYCNSRCRRAFFPFCYGKGSKKSVLPLENDV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02843 344 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Phac7g02843 344 PANTHER RING-H2 FINGER PROTEIN ATL16 20 341 IPR044600 GO:0016567|GO:0016740
Phac7g02843 344 CDD RING-H2_EL5-like 131 173 - -
Phac7g02843 344 SMART ring_2 131 172 IPR001841 -
Phac7g02843 344 SUPERFAMILY RING/U-box 130 178 - -
Phac7g02843 344 Pfam Ring finger domain 131 173 IPR001841 -
Phac7g02843 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 179 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02843 Phac-Chr7 32059077 32061317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02843 32 307 C3H Transcription Factor Family AT1G04360 44.516 9.16e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02843 K19041 - gmx:100809883 624.394