LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac7g02748	ATGAATCACCTACCGTCCAACCTGTTGCCTGGTGAAGGAAGCCCGGAGTGGATGAACAAGGGGGACAACACGTGGCAGTTAACGACAGGCACTCTGGTGGGCCTGCAAAGTGTTCCGGGCCTGGTCATCCTCTACGGCAGTATAGTCAAGAAGAAATGGGCTTTGAACTCTGCGTTCATGGCCCTCTACGCTTTCGCGGTGGTTCTTGTTTGTTGGGTGGGGTGGTGCTACCAAATGTCCTTTGGTGAAAGGATTTTTCCGTTTCTGGGACGCCCAAACGTGGCCTTGGACAGCCAATTCCTTCTGGACAAAGCTTTTTCTGGGGACTTTCCCAATGCCACCATGGTATACTTTCAGCTCGTCTTTGCCGCCATCACGTTGATTCTCATCGCAGGGGCGTTGCTCGGGAGAATGAACTTCCACGCCTGGATGTTGTTTGTTCCACTTTGGGTTACCTTCTCTTACACCATCTGTGCCTTCAGTATATGGAGCACTGAGGGATGGCTGTTCAAAATGGGCCTCGTTGATTACTCCGGTGGCTTTGTTATTCACCTTTCTTCTGGGGTTGCTGGTTTCATCGCAGCATATTGGGTAGGGCCAAGGACAGTGAAGGATAGAGAGAGGTTCCCTCCAAACAACATACTTCTGATGCTGGCTGGGGCTGGCCTACTATGGATGGGGTGGAGTGGATTCAACGGCGGAGATCCATACGCAGCCAGCATAGATGCATCTCTGGCTGTTCTTAACACCCACGTCTGCACGGCCATGAGTTTGTTGACTTGGCTTTTCCTTGATATCCTCTTCTTTGGAAAACCTTCGGTGATTGGTGCCACTCAGGGCATGATCACTGGTTTGGTTTGCATCACTCCTGCTGCCGGTGTGGTGCAAGGTTGGGCAGCAATGATAATGGGAATTATGTCAGGAAGCATTCCGTGGTACACAATGATGGTCCTCCACAAAGAAATTAGGATCCTGAAACAGGTGGATGATACCATGGCAGTTTTCCACACTCATGCAGTGGCTGGTTGCTTAGGTGGCGTTCTGGCTGGCTTCTTTGCTGACCCTAACCTTTGCCGTCTCTTCTATGGGGTACAGGATTCGGTGCACTATACAGGGCTTGCTTATGGCATATTGACAGGGAGGCCTAAAGCAGGGTTTAGGCAAATGGGGGTTCAGCTTCTTGGCATTGTGTTTGTGATACTTCTGAATGTGAGCACAACTAGCATAGTGTGTTTGGTTGTTAAGACCTTAGTTCCACTGAGGCTGCAGGAAGATGAGTTGGAAGTTGGGGATGATGCAGTGCATGGTGAGGTTGCATATGCATTGTGGGGCGATGGAGAGAAGCTTGAGACTGCCAATGAGGCTTTCAGTTTTCAGAGGAATCCAGAATGGCCAACTGTGGAACTTAAAACTTCTAGTAATGCTCCATTGGAGAGTGATTAA	1443	0.499	MNHLPSNLLPGEGSPEWMNKGDNTWQLTTGTLVGLQSVPGLVILYGSIVKKKWALNSAFMALYAFAVVLVCWVGWCYQMSFGERIFPFLGRPNVALDSQFLLDKAFSGDFPNATMVYFQLVFAAITLILIAGALLGRMNFHAWMLFVPLWVTFSYTICAFSIWSTEGWLFKMGLVDYSGGFVIHLSSGVAGFIAAYWVGPRTVKDRERFPPNNILLMLAGAGLLWMGWSGFNGGDPYAASIDASLAVLNTHVCTAMSLLTWLFLDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAMIMGIMSGSIPWYTMMVLHKEIRILKQVDDTMAVFHTHAVAGCLGGVLAGFFADPNLCRLFYGVQDSVHYTGLAYGILTGRPKAGFRQMGVQLLGIVFVILLNVSTTSIVCLVVKTLVPLRLQEDELEVGDDAVHGEVAYALWGDGEKLETANEAFSFQRNPEWPTVELKTSSNAPLESD*	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac7g02748	480	PANTHER	AMMONIUM TRANSPORTER MEP2	6	451	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Phac7g02748	480	ProSitePatterns	Ammonium transporters signature.	176	201	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Phac7g02748	480	NCBIfam	ammonium transporter	22	440	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Phac7g02748	480	Pfam	Ammonium Transporter Family	25	440	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Phac7g02748	480	SUPERFAMILY	Ammonium transporter	17	422	-	-
	Phac7g02748	480	PRINTS	Rhesus blood group protein signature	119	135	IPR002229	GO:0005886
	Phac7g02748	480	PRINTS	Rhesus blood group protein signature	246	268	IPR002229	GO:0005886
	Phac7g02748	480	PRINTS	Rhesus blood group protein signature	215	233	IPR002229	GO:0005886
	Phac7g02748	480	PRINTS	Rhesus blood group protein signature	301	319	IPR002229	GO:0005886
	Phac7g02748	480	FunFam	Ammonium transporter	7	443	-	-
	Phac7g02748	480	Gene3D	Ammonium transporter AmtB like domains	11	443	IPR029020	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac7g02748	Phac-Chr7	31276168	31277846	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac7g02748	113	463	Inorganic Solute Cotransporters	AT2G38290	58.974	1.04e-141	409

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac7g02748	K03320		-	gmx:112999382	837.025