Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02741 ATGTTCCCTTCAGTTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGGTGGACTCAATCACGTAGTCACAACAATCATTTCTCCCCAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCGGATGCTGAAGTGATTGCTCTATCACCGAAGACTCTTCTAGCTACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAAGCATACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCTCTCGGGGACCTCACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACTCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAATTGGCTACCAGTACCACAAACCCCTTAGTCCAATCCCTCTTCCTTTTCCCAACCCAACAACAACACACCAACAACAACACCAACTTCATCAATCATTGGGACCCAAACCCTAACCCTAGCAATCTTCCCACCCTCCACAACACCATCAAACCTGAATCTCACAACTTCCACACCCACATCTTCAACAACAACAACATCTCTTCTCCTTCATTGCTTCTTCATCATCCCCCCAAGACCATGATAACGTCACCCTACCGTGACCTCCACGTCCGCCCCTCCAACGCTGCCACGTCAGCGCACCTCTCCGCCACTGCGCTGCTCCAGAAGGCTGCAACCTTTGGCGCCGCCGCTATCACGGGTCCCAGTCACGTGACTCCGCTCAGCATGGCCGAGTTGGGAACCGTGTCGACTCAGCTCGACTCGGTGCCACCCGACCGGTACATCAACATAAGGGACCTCAAGAATAGCGACGGTCTCACCAGGGACTTTCTTGGCCTCACCAATAGCGACGCGGTTGACGTTAGCATCGACGTCAAGGACATGCTAACGTTCACGGGAGGGAGCGTAGAGTACAACCATTACCACCACCAACCCTCCTACGAGCACCATCACAATAGTAACTCGCTTTTCAAGCCACAGCATGGGTTTGGATTCCTCCGGACAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTGA 1332 0.5 MFPSVMSNSNSLSEEATVSCGTRIGGLNHVVTTIISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATSTTNPLVQSLFLFPTQQQHTNNNTNFINHWDPNPNPSNLPTLHNTIKPESHNFHTHIFNNNNISSPSLLLHHPPKTMITSPYRDLHVRPSNAATSAHLSATALLQKAATFGAAAITGPSHVTPLSMAELGTVSTQLDSVPPDRYINIRDLKNSDGLTRDFLGLTNSDAVDVSIDVKDMLTFTGGSVEYNHYHHQPSYEHHHNSNSLFKPQHGFGFLRTTTGPESWGNCE* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02741 443 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Phac7g02741 443 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Phac7g02741 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Phac7g02741 443 Gene3D Classic Zinc Finger 142 207 - -
Phac7g02741 443 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 400 IPR031140 -
Phac7g02741 443 Gene3D Classic Zinc Finger 52 121 - -
Phac7g02741 443 FunFam protein indeterminate-domain 12-like 52 120 - -
Phac7g02741 443 SMART c2h2final6 73 95 IPR013087 -
Phac7g02741 443 SMART c2h2final6 114 144 IPR013087 -
Phac7g02741 443 SMART c2h2final6 149 169 IPR013087 -
Phac7g02741 443 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02741 Phac-Chr7 31176656 31181206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02741 17 413 IDZ Gene Family AT4G02670 50.000 5.40e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac7g02741 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02741 K25870 - gmx:100812496 726.472