Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02589 ATGTCGTTTAGGAATATCATCGTGGAGAGGAAGGGATTTGAGTTTAAGTTTGGATATAGTATGAGATCCAGGTCACAGTCACACAGTGATGCCATTGTCCAGGATCGTTTGGCGGTGCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTTCTCATGAGGATTGAGGCCTCTGAGGATTCCTGGCCTGCCCGAAAACACGTCGTCGCCTGTGCTGGAGTGTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCCAATCCCCTCAAGTATCTGGCAAGTTGACATTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAGTGCTATATTAAACGAAATCACAGTAATAAAACATATTATCTGTTTCTTGGTTTAAACCAAGCCTCAACTGAGGATGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGACGTGCAACTCACACTGACTATATCATTTCTCTTAACTGTGATGATGTGTCAAGAGGGAGTAATACCTATATTGGGAAGTTGAGATCAAACTTTTTGGGCACCAAATTCACTGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTAGTCAGTCTCAAGCAAGTTTCTCCCAGAGTTCCTGCTGGCAATTACCCCATTGCTCATGTCTCGTATGATCTGAATGTTTTGGGCTCAAGAGGCCCTAGAATAATGCACTGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACTCAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATTCCTTTCTTCAGATCAAAATCAACCCGCATGGATAGTCTCACGTCAGTGCCTTCGACTTGTCAAAATGAGGGGATGCTGGTACTGCAAAACAAGTCCCCCAGGTGGCATGAACAACTTCAATTCTGGTGTCTGAACTTCAACGGGCGTGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCAACAAATGGAATTTCTGAGCAGGCTGAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTATCAGTATCCAATCTCGGCCTTTGAAGCATTTGCGATTTGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1203 0.4505 MSFRNIIVERKGFEFKFGYSMRSRSQSHSDAIVQDRLAVLDGLKQSCWANMPPELLRDVLMRIEASEDSWPARKHVVACAGVCRSWREIMKEIVQSPQVSGKLTFPISLKQPGPRDSLLQCYIKRNHSNKTYYLFLGLNQASTEDGKFLLSARKCRRATHTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDSLTSVPSTCQNEGMLVLQNKSPRWHEQLQFWCLNFNGRVTVASVKNFQLVASPTNGISEQAEENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02589 400 CDD F-box_AtTLP-like 48 92 - -
Phac7g02589 400 PANTHER TUBBY-RELATED 30 398 - -
Phac7g02589 400 Pfam Tub family 109 395 IPR000007 -
Phac7g02589 400 SUPERFAMILY Tubby C-terminal domain-like 97 400 IPR025659 -
Phac7g02589 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Phac7g02589 400 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Phac7g02589 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Phac7g02589 400 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Phac7g02589 400 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Phac7g02589 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Phac7g02589 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Phac7g02589 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Phac7g02589 400 FunFam Tubby-like F-box protein 105 400 - -
Phac7g02589 400 Gene3D Tubby Protein; Chain A 107 400 IPR025659 -
Phac7g02589 400 Pfam F-box domain 48 94 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02589 Phac-Chr7 29968659 29972708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02589 1 400 TUB Transcription Factor Family AT2G47900 73.058 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phac7g02589 Tub 4.2e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02589 K19600 - gmx:100809257 763.451